Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F21
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    30   1.3  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    30   1.3  
U65429-1|AAB48241.1|  450|Caenorhabditis elegans alpha-tubulin M...    28   4.1  
D21134-1|BAA22203.1|  449|Caenorhabditis elegans alpha-3 tubulin...    28   4.1  
AF003387-1|AAB54263.2|  450|Caenorhabditis elegans Mechanosensor...    28   4.1  
AB017190-1|BAA32600.1|  450|Caenorhabditis elegans Alpha tubulin...    28   4.1  
U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric chr...    27   7.1  
AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like p...    27   7.1  
Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical pr...    27   9.4  
D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin...    27   9.4  
D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin...    27   9.4  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 138 RRASVCKSFHCICTRLFLGLTPLTARVCELSAVFVPLCCRRRNACVFQDRISCHLRGG*C 317
           R    C+S  C+C+       PL+AR+C  + V  P  C  + A   +      +    C
Sbjct: 593 RYGEECRSGVCVCSYNCPANPPLSARICGENGVLYPSLCHLQLASCQKGAPISEMPPSHC 652

Query: 318 ASSEDS 335
            SS+ S
Sbjct: 653 HSSKTS 658


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 138 RRASVCKSFHCICTRLFLGLTPLTARVCELSAVFVPLCCRRRNACVFQDRISCHLRGG*C 317
           R    C+S  C+C+       PL+AR+C  + V  P  C  + A   +      +    C
Sbjct: 601 RYGEECRSGVCVCSYNCPANPPLSARICGENGVLYPSLCHLQLASCQKGAPISEMPPSHC 660

Query: 318 ASSEDS 335
            SS+ S
Sbjct: 661 HSSKTS 666


>U65429-1|AAB48241.1|  450|Caenorhabditis elegans alpha-tubulin
           MEC-12 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 MCLL*GFRGDVVPNHTSTDIVTRKNMKRIVF 406
           +CLL  FRGDVVP   +  I T K  + I F
Sbjct: 315 VCLL--FRGDVVPKDVNAAIATIKTKRSIQF 343


>D21134-1|BAA22203.1|  449|Caenorhabditis elegans alpha-3 tubulin
           protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 MCLL*GFRGDVVPNHTSTDIVTRKNMKRIVF 406
           +CLL  FRGDVVP   +  I T K  + I F
Sbjct: 314 VCLL--FRGDVVPKDVNAAIATIKTKRSIQF 342


>AF003387-1|AAB54263.2|  450|Caenorhabditis elegans Mechanosensory
           abnormality protein12 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 MCLL*GFRGDVVPNHTSTDIVTRKNMKRIVF 406
           +CLL  FRGDVVP   +  I T K  + I F
Sbjct: 315 VCLL--FRGDVVPKDVNAAIATIKTKRSIQF 343


>AB017190-1|BAA32600.1|  450|Caenorhabditis elegans Alpha tubulin
           (tba-3) protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 MCLL*GFRGDVVPNHTSTDIVTRKNMKRIVF 406
           +CLL  FRGDVVP   +  I T K  + I F
Sbjct: 315 VCLL--FRGDVVPKDVNAAIATIKTKRSIQF 343


>U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 4 protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 252 NTKGRKQPTTHRPLQSMESNLRKGE 178
           N+KG ++P THR ++  E  L K E
Sbjct: 739 NSKGNRRPRTHRGMKLKEHQLMKPE 763


>AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like
           protein HCP-4 protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 252 NTKGRKQPTTHRPLQSMESNLRKGE 178
           N+KG ++P THR ++  E  L K E
Sbjct: 739 NSKGNRRPRTHRGMKLKEHQLMKPE 763


>Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical
           protein C47B2.3 protein.
          Length = 448

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 MCLL*GFRGDVVPNHTSTDIVTRKNMKRIVF 406
           +CLL  +RGDVVP   +T I   K  + I F
Sbjct: 313 VCLL--YRGDVVPKDVNTAIAAIKTKRTIQF 341


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 349 AEPHKHGYCDEEKYETHRV 405
           AEPH HG  + +K+E  R+
Sbjct: 593 AEPHLHGIVNADKFEVRRI 611


>Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical
           protein F26E4.8 protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 MCLL*GFRGDVVPNHTSTDIVTRKNMKRIVF 406
           +CLL  +RGDVVP   +T I   K  + I F
Sbjct: 313 VCLL--YRGDVVPKDVNTAIAAIKTKRTIQF 341


>U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical
           protein T21E12.2 protein.
          Length = 380

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 485 TSIMTNHVTRTSLAFLHLFQHIYSKNGTRCVSYFSSSQYPC 363
           TS++ +  T T+ AF ++FQH +S + +R  ++   S  PC
Sbjct: 109 TSLLISQATNTT-AF-NMFQHSFSVSVSRIATFEGDSIQPC 147


>D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin
           protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 MCLL*GFRGDVVPNHTSTDIVTRKNMKRIVF 406
           +CLL  +RGDVVP   +T I   K  + I F
Sbjct: 313 VCLL--YRGDVVPKDVNTAIAAIKTKRTIQF 341


>D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin
           protein.
          Length = 448

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 MCLL*GFRGDVVPNHTSTDIVTRKNMKRIVF 406
           +CLL  +RGDVVP   +T I   K  + I F
Sbjct: 313 VCLL--YRGDVVPKDVNTAIAAIKTKRTIQF 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,922
Number of Sequences: 27780
Number of extensions: 320651
Number of successful extensions: 1004
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)