Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F21
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   4.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   4.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   8.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.6  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   8.6  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 171 CNGRICKLKPGVVPKG-CNGMC 109
           C+GR  +  P VVPK  C  +C
Sbjct: 46  CDGRCQRFCPNVVPKPLCIKIC 67


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 171 CNGRICKLKPGVVPKG-CNGMC 109
           C+GR  +  P VVPK  C  +C
Sbjct: 46  CDGRCQRFCPNVVPKPLCIKIC 67


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 401 RCVSYFSSSQYPCLCGSALHLL 336
           R + + +   YP L   ALHLL
Sbjct: 129 RVLLHLAMHDYPPLVSGALHLL 150


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 366 VLVWFGTTSPLNPQRRHINRPSDD 295
           + +WF T+  ++ + R + R  DD
Sbjct: 548 IYIWFTTSGTISEKFRKLIRIEDD 571


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 401 RCVSYFSSSQYPCLCGSALHLL 336
           R + + +   YP L   ALHLL
Sbjct: 97  RVLLHLAMHDYPPLVSGALHLL 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,169
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)