Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F19
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)             118   3e-27
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)                     25   6.3  

>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score =  118 bits (284), Expect = 3e-27
 Identities = 73/185 (39%), Positives = 100/185 (54%), Gaps = 30/185 (16%)
 Frame = +3

Query: 105 RFIAPIIQDNPTGWGPCEMPDQFRDMPYQPFSKGDRLGKI-SDWTVVQDKKYQ----NKY 269
           +F AP IQDNP GWGPC +P  F+D+PYQPFSK DRLGK+   +T    +K +    +KY
Sbjct: 6   KFCAPEIQDNPDGWGPCSVPTAFKDIPYQPFSKADRLGKVWLVFTYTDFRKVRFVPGDKY 65

Query: 270 ASQFGAGSS-YAYFHDEDESTFHLVDTTRVQKPPY---------QXXXXXXXXXXXXXXX 419
            SQFG G+  ++Y+H+EDE++F LVDT+R Q+P Y         +               
Sbjct: 66  QSQFGTGNQMFSYYHEEDETSFQLVDTSRTQRPGYMRNRNRFNQRGGYRRDNRGGRFQGQ 125

Query: 420 XXXXXMTTLNKQRD------RKLGKRWG-------QRGAPMKIRDASVTVRPTWVTIED- 557
                M  L++ RD      RK+ + WG       ++   M  R ASVTVR  W  +ED 
Sbjct: 126 GGNMGMQNLSRGRDTRNKFQRKMQRNWGGGRHWSDKKTGGMHKRVASVTVREEWKVLEDG 185

Query: 558 -MDFP 569
            +DFP
Sbjct: 186 ELDFP 190


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = -3

Query: 471 RVCGHVACSK*SCHQEYVHL*RHDRAVHEHVLVGMAVSAL*LYPPSGRCFHLHHGNRHMK 292
           RVCG    ++ S H  + HL  HD   HE       +     +  +    HLH  + H  
Sbjct: 387 RVCGKYDTTRYSTHT-HTHL--HDTHTHETPRHDTHLHDTHPHETTRHDTHLHDTHTHET 443

Query: 291 NRHQTVMH 268
            RH T +H
Sbjct: 444 TRHDTHLH 451


>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
          Length = 125

 Score = 25.4 bits (53), Expect(2) = 6.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 321 HLHHGNRHMKNRHQTVMHTYSGTSYLA 241
           H H+   H    H    HTY GT + A
Sbjct: 88  HDHYDGGHHDGMHHDYGHTYEGTEHQA 114



 Score = 21.0 bits (42), Expect(2) = 6.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 432 HQEYVHL*RHDRAVHEH 382
           H   VH+  HD   H+H
Sbjct: 74  HDHDVHIHHHDYGGHDH 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,393,532
Number of Sequences: 59808
Number of extensions: 380592
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)