Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F18
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q73NV9 Cluster: Membrane protein, putative; n=1; Trepon...    35   1.7  
UniRef50_A6LD19 Cluster: Conserved hypothetical transmembrane pr...    33   5.2  
UniRef50_Q55GG7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  
UniRef50_A6DEH3 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_Q73NV9 Cluster: Membrane protein, putative; n=1; Treponema
           denticola|Rep: Membrane protein, putative - Treponema
           denticola
          Length = 377

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 234 VFRYIFKYMLL-FTMWLIFYMYLRFVTLSLCN*V*FMTSGTPRNELI*LLFYSLNVMI 404
           +F Y+FK +LL F +  +F+ ++ FV   L      ++   P  +++ LLFYSL  +I
Sbjct: 11  IFVYVFKELLLYFIVSFLFFFFIFFVNQILLMAEEILSKKAPTKDVLLLLFYSLPFII 68


>UniRef50_A6LD19 Cluster: Conserved hypothetical transmembrane
           protein; putative transmembrane protein; n=1;
           Parabacteroides distasonis ATCC 8503|Rep: Conserved
           hypothetical transmembrane protein; putative
           transmembrane protein - Parabacteroides distasonis
           (strain ATCC 8503 / DSM 20701 / NCTC11152)
          Length = 509

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 234 VFRYIFKYMLLFTMW--LIFYMYLRFVTLSL 320
           VFR +  Y+L +T W  LIFY +L FV L+L
Sbjct: 171 VFRLLIVYLLTWTAWDRLIFYGFLMFVVLAL 201


>UniRef50_Q55GG7 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 84

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 186 VYQIIKP*EIEICCYYVFRYIFKYMLLFTMWLIFYM 293
           VY+++    + +CC  +F ++F ++ +F MW  FY+
Sbjct: 39  VYRVLFISLLVVCCICMFVFVFVFVFVFMMWCGFYI 74


>UniRef50_A6DEH3 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 960

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = -3

Query: 531 KNSYTPT*PLTYEWTVDLFTISYQKKSY---NKCTLPHYYFSNRFLS*RLKSKITVILAH 361
           K   +PT  LT+++    F + Y KK++   N      Y     FL   LKSK T+I   
Sbjct: 177 KAKLSPTDILTFDFNSKFFKVIYNKKTFLFNNLKITGKYNIKTTFLLSNLKSKKTIIKDK 236

Query: 360 SLEFQKS*TK--LNYKAIMLQILSTY 289
            ++      K  LN K I+ +I   Y
Sbjct: 237 KIKIFAFDNKISLNKKNILFEIKKIY 262


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,374,357
Number of Sequences: 1657284
Number of extensions: 10986976
Number of successful extensions: 21535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21480
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)