Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F18
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    27   1.6  
SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...    25   8.6  

>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 554 TTLPNIKKKIVTHQRDHLRTSGLSTSSLFHTKKNHTINVPYLIITS 417
           TT+  +  K +   RD      LS   + H  + + +NVP++++ S
Sbjct: 121 TTMGCVGPKSIIEVRDGNSFLDLSVRQIEHLNRKYNVNVPFVLMNS 166


>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 234 VFRYIFKYMLLFTMWLIFYMYLRFVTL 314
           V R  F Y+ + T+WL  Y  L+++ L
Sbjct: 149 VVRGYFPYLGMITIWLTDYPILKYIML 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,976
Number of Sequences: 5004
Number of extensions: 51511
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)