Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F18
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36294| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-08)                 30   1.7  
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_47558| Best HMM Match : Abhydrolase_1 (HMM E-Value=1.8)             28   6.7  
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  27   8.9  
SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)                        27   8.9  

>SB_36294| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-08)
          Length = 353

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 146 PPTIKAGFSTFYLFTHNRSN 87
           PP  K  F TFY  THNRSN
Sbjct: 292 PPIRKCLFKTFYRRTHNRSN 311


>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 219 ICCYYVFRYIFK-YMLLFTMWLIFYMYLRFVTLSLCN*V*FMTSGTPRNELI 371
           +C   VFRY+F  +  LF   L F   + F  +SLC  V   ++  PR   +
Sbjct: 76  LCFPGVFRYVFPVFFALFAQCLRFVYPVFFAMISLCFYVLLCSNSLPRTRFV 127


>SB_47558| Best HMM Match : Abhydrolase_1 (HMM E-Value=1.8)
          Length = 299

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 467 HTKKNHTINVPYLIITSVTDSY 402
           HTK  HTI VP L +T+  D +
Sbjct: 195 HTKPLHTITVPVLCLTAADDPF 216


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 545 ARWSKSHDNECDMIKNDGDR 604
           ARW K++ +E DM+K+  DR
Sbjct: 247 ARWVKAYRDEMDMLKSKADR 266


>SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)
          Length = 529

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 428 IITSVTDSYHNV*RVK*QLY*LIPWSSRSHKLNSITKR*CYKS*VH 291
           ++T   D Y  V R   + Y L+P+ SR+H ++ +T+  C+   VH
Sbjct: 247 VVTGCFDEY--VHRRDVRCYVLVPYGSRNHAMSVVTE--CFNEYVH 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,836,445
Number of Sequences: 59808
Number of extensions: 342493
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)