Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F18
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 228  YYVFRYIFKYMLLFTMWLIFYMYLRFVTLS 317
            YY   YIF  +L+F   ++FY+Y R+  ++
Sbjct: 2836 YYEMLYIFFSVLIFVKEIVFYLYGRYKVIT 2865


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 228  YYVFRYIFKYMLLFTMWLIFYMYLRFVTLS 317
            YY   YIF  +L+F   ++FY+Y R+  ++
Sbjct: 2836 YYEMLYIFFSVLIFVKEIVFYLYGRYKVIT 2865


>Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical
           protein ZC84.3 protein.
          Length = 826

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 520 HTNVTTYVRVDCRPLHYFIPK-KIIQ*MYLTSLL 422
           H  + T   + C P+H  +PK +++   YLTSLL
Sbjct: 392 HHQLVTVCELMCDPIHLMVPKARVVLLEYLTSLL 425


>Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical
           protein C03E10.3 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 384 YSLNVMIGIGY*SNNEVRYIYCMIFF 461
           +S N  + I Y S+N++ YIY  +FF
Sbjct: 345 FSNNCFLNILYLSSNQITYIYLYLFF 370


>AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical
           protein F34D6.4 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 177 LRIVYQIIKP*EIEICCYYVFRYIFK 254
           LR+ YQ+++P +I    ++   Y+FK
Sbjct: 31  LRVTYQLLRPSQISFLFFFSIFYVFK 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,631,037
Number of Sequences: 27780
Number of extensions: 277730
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)