Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F17
         (587 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   1.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.4  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   4.4  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   4.4  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 61  QVPEEILRLFTINECEIN 114
           ++P E LRLFT  EC  N
Sbjct: 495 ELPGETLRLFTCMECPNN 512


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 61  QVPEEILRLFTINECEIN 114
           ++P E LRLFT  EC  N
Sbjct: 502 ELPGETLRLFTCMECPNN 519


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 208  LEQKAKTMTEWITLN 252
            +E K KT TEWI ++
Sbjct: 1526 IEHKKKTSTEWIQVS 1540



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 516  SIP*NEASSNTPVGLTFLSNITIPCL 439
            S+P   AS +     T+  ++T+PCL
Sbjct: 1304 SVPAKIASFDDTFTTTYKEDVTLPCL 1329


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 205 CLEQKAKTMTEWITLNVGGKHFTTSRSTLTAKE 303
           CL     +M     LN G  +FT  + T   KE
Sbjct: 239 CLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKE 271


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 205 CLEQKAKTMTEWITLNVGGKHFTTSRSTLTAKE 303
           CL     +M     LN G  +FT  + T   KE
Sbjct: 28  CLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKE 60


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 205 CLEQKAKTMTEWITLNVGGKHFTTSRSTLTAKE 303
           CL     +M     LN G  +FT  + T   KE
Sbjct: 28  CLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKE 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,078
Number of Sequences: 336
Number of extensions: 2850
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)