Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F17
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.0  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   4.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.2  
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    25   6.2  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    25   8.2  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.2  

>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +1

Query: 43  EISKLFQVPEEILRLFTINECEINDV-RVLRDE-ESIYINLHEKNCDKVEENVVNLCLEQ 216
           EI +L Q+  E + L+   +     + ++L D   S+  +++E+N   ++ ++ NLCL+ 
Sbjct: 362 EIEQLQQIAAEDISLYGSADTYYERITQILLDRISSLSESVNEQNIKSLQTDIDNLCLQS 421

Query: 217 KA-KTMTEWITLN 252
            + K ++E   LN
Sbjct: 422 NSLKQLSEVDDLN 434


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 344 MCTLMNPSATDSSGA--YFIDRSPNYF 418
           + T++NP      G   YFID+ PN F
Sbjct: 521 LATMINPDELQKRGVDVYFIDQGPNEF 547


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 25  IVTLKKEISKLFQVPEEILRLFTINECEINDVRVLRDEESIY 150
           I+ L K+ + L +  E +   FT++  E+ ++RVL    S++
Sbjct: 599 ILLLLKDYADLSEPWENVANQFTVSFDELENIRVLNSLPSLF 640


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 142 SIYINLHEKNCDKVEENVV-NLCLEQKAKTMT 234
           S+Y+NL +KN  K+  +V+ N    Q+  TMT
Sbjct: 185 SLYMNLKDKNNPKLRASVLRNEITPQRLSTMT 216


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 422 PILNYLRHGIVILDKNVNPT 481
           PI  Y+  G++ LDK  NP+
Sbjct: 57  PIAEYVSSGVINLDKPANPS 76


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 326 CLQVKIMCTLMNPSATDSSGAYFIDRSPNYFEPILNYLRHGIVILDKNVN 475
           C   K+ CT   PS+  SS       SP Y E + + +R+   +L KN N
Sbjct: 50  CKAGKLECTYHMPSSRKSSF------SPEYVENLESRVRYLETLLKKNTN 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,728
Number of Sequences: 5004
Number of extensions: 46282
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)