Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F17
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307... 42 3e-04
10_08_0144 - 15176059-15176112,15176375-15176455,15176711-151767... 35 0.055
01_03_0074 + 12215414-12215603,12216178-12216236,12216605-122167... 34 0.097
07_03_0093 + 13330867-13332312 33 0.17
07_03_0833 - 21844123-21844929 33 0.22
02_04_0590 - 24154366-24155742 32 0.30
04_04_0410 - 25010455-25011819 31 0.68
08_02_1449 - 27174451-27178005 29 2.1
07_03_1408 - 26353389-26355191 29 2.7
03_03_0094 + 14378953-14380728 29 2.7
06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724 29 3.6
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357... 28 6.3
>03_01_0394 +
3073903-3073954,3074052-3074161,3074234-3074368,
3074461-3074616,3074793-3074876,3075069-3075115,
3075305-3075378,3075634-3075692,3076149-3076208,
3076826-3076906,3077033-3077086
Length = 303
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1
Query: 241 ITLNVGGKHFTTSRSTLTAKEPQSMLARMFASENNV 348
+ LN+GGK + T+ TLT +EP SMLA MF+ + +
Sbjct: 13 VLLNIGGKRYATTVETLTQREPSSMLAAMFSGRHTL 48
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 380 SGAYFIDRSPNYFEPILNYLRHGIVILDKNVNPTGVLEEASFYGIDSMIPALNN 541
+G F+DR +F +LN+LR G V +L EA +Y + + +N+
Sbjct: 54 TGMVFVDRDGKHFRHVLNWLRDGAVPDMSESEYQQLLREAEYYQLLGLADCIND 107
>10_08_0144 -
15176059-15176112,15176375-15176455,15176711-15176770,
15177220-15177278,15177412-15177485,15177595-15177641,
15177852-15177935,15178051-15178212,15178264-15178467,
15178541-15178647,15178746-15178773
Length = 319
Score = 34.7 bits (76), Expect = 0.055
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 371 TDSSGAYFIDRSPNYFEPILNYLRHGIVILDKNVNPTGVLEEASFY 508
T GA F+DR F +LN+LR G V + +L EA +Y
Sbjct: 44 TTEDGAVFVDRDGELFRHVLNWLRDGAVPALADAEYRQLLREAEYY 89
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 241 ITLNVGGKHFTTSRSTLTAKEPQSMLA 321
I LN+GG + T+ TLT ++P S+LA
Sbjct: 5 ILLNIGGSRYETTADTLTQRDPGSLLA 31
>01_03_0074 +
12215414-12215603,12216178-12216236,12216605-12216703,
12216820-12216946,12216989-12217252,12217382-12217503,
12217575-12217646
Length = 310
Score = 33.9 bits (74), Expect = 0.097
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +1
Query: 25 IVTLKKEISKLFQVPEEILRLFTINECEINDVRVLRDEESIYINLHEKNCDKVEENVVNL 204
I+ ++++ K + P++ +L + +ND+ + RD + Y+ H+K K + NL
Sbjct: 73 IIKIQEDYEKNTRCPQKYFKLMKLMIDPMNDLSLTRDNIASYLQKHKKRLQKEYQKHQNL 132
Query: 205 CLEQK 219
LEQK
Sbjct: 133 -LEQK 136
>07_03_0093 + 13330867-13332312
Length = 481
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 353 LMNPSATDSSGAYFIDRSPNYFEPILNYLRHGIVI---LDKNVNPTGVLEEASFYGIDSM 523
L + + T +S +F+DR P F +L++LR G + D + +L EA +G++
Sbjct: 31 LASLAPTPASAPHFLDRDPRLFATLLSFLRRGRLAPTSPDSDPPSPALLAEARHFGVEGA 90
Query: 524 IPA 532
+ A
Sbjct: 91 LLA 93
>07_03_0833 - 21844123-21844929
Length = 268
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 425 ILNYLRHGIVILDKNVNPTGVLEEASFYGIDSMIPALN 538
+ NYLR G ++ +V PT VL A + +D +PA N
Sbjct: 76 VANYLRPGDAVILLHVRPTSVLYGADWGSVDLSLPAAN 113
>02_04_0590 - 24154366-24155742
Length = 458
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 389 YFIDRSPNYFEPILNYLRHGIVILDKNVNPTGVLEEASFYGI 514
YFIDR P F +L+ LR G + + +V + EA +YG+
Sbjct: 58 YFIDRDPECFAVLLDLLRTGGLHVPPHVADGVLCREALYYGL 99
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 241 ITLNVGGKHFTTSRSTLTAKEPQSMLARMFASENN 345
+ LNVGG+ F T STL + +ML M + N
Sbjct: 8 VRLNVGGRVFETMASTLASAGRDTMLGAMIDASWN 42
>04_04_0410 - 25010455-25011819
Length = 454
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 389 YFIDRSPNYFEPILNYLRHGIVILDKNVNPTGVLEEASFYGI 514
YFIDR+P F +L+ LR G + + + + EA +YG+
Sbjct: 63 YFIDRNPACFAVLLDLLRTGSLHVPPQLPEKLLYREALYYGL 104
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +1
Query: 34 LKKEISKLFQVPEEILRLFTINECEINDVRVLRDEESIYIN--LHEKNCDKVEENVVNLC 207
L + K+ ++ EE+ + + + V V+ + ++ + D +E VVNL
Sbjct: 122 LNSVLKKINELVEEMNKFGLVERADQATVHVIHPQTHSGLDSLMEIVGRDDDKEMVVNLL 181
Query: 208 LEQKAKTMTEWITL-NVGGKHFTT 276
LEQ++K M E +++ +GG TT
Sbjct: 182 LEQRSKRMVEVLSIVGMGGLGKTT 205
>07_03_1408 - 26353389-26355191
Length = 600
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 422 PILNYLRHGIVILDKNVNPT 481
PI YLR+G++ LDK NP+
Sbjct: 96 PIAEYLRYGVINLDKPSNPS 115
>03_03_0094 + 14378953-14380728
Length = 591
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 422 PILNYLRHGIVILDKNVNPT 481
PI YLR+G++ LDK NP+
Sbjct: 100 PIAEYLRYGVINLDKPSNPS 119
>06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724
Length = 353
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 97 NECEINDVRVLRDEESIYINLHEKNCDKVEENVVNLCLEQKAKTMTE 237
+E E N V + E ++ LH++N +++EE + L L++ K + E
Sbjct: 284 DEAEYNGVNAVELERRLHELLHQRNQERIEE--LELALKRAEKKLVE 328
>01_07_0242 +
42234217-42234320,42234708-42235029,42235377-42235778,
42235921-42236265,42236785-42236854,42237098-42237173,
42237309-42237459
Length = 489
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 146 ILSSSLNTRTSFISHSFIVNKRSISS 69
I+SSS +T TS I H+ ++N +++S
Sbjct: 447 IMSSSHDTHTSLIDHNIVLNLAAVAS 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,085,803
Number of Sequences: 37544
Number of extensions: 255044
Number of successful extensions: 571
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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