Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F16
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 64 2e-11
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 64 2e-11
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 64 2e-11
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 64 2e-11
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 64 2e-11
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 64 2e-11
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 64 2e-11
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 64 2e-11
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 64 2e-11
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 64 2e-11
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 64 2e-11
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 2.0
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.5
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 3.5
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 6.2
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 25 6.2
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom... 25 6.2
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 8.1
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Frame = +3
Query: 9 VESINKTMDL-NKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
V I+ T D N++ T ND++L L+ N ++ + + L ++ ++
Sbjct: 851 VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI----QLKDGLLINSKD---QI 903
Query: 186 YLPSEFR--RQAFDTIHG---LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
LP++ + R H L HPG + +I R+ W IRK + + + C CQ +
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQIN 963
Query: 351 KVTRHTK-SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALED 524
K H P+ P + + +D I LP S+G+ VDRF++ ++ +
Sbjct: 964 KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKS 1023
Query: 525 IKAETVAKAFIRDWISRFG 581
I AE A+ F + I+ FG
Sbjct: 1024 ITAEQTARMFDQRVIAYFG 1042
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 571 DIQSLMKAFATVSALISSKAMTSGQRVNRSTAVKQYLKPFEIGS 440
DI L + +T + L+ S+ + ST K YLKP E GS
Sbjct: 761 DILKLPQPISTWNKLLDSECHRNPNMEFLSTFSKNYLKPQEFGS 804
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 75 LQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRLYLPSEFRRQAFD 221
L+ L + SS KL+L+ ++ +L DT+ L+ PS+ R + FD
Sbjct: 64 LEPLKRDFSSMDKLKLIGKITYKLRLKGDTALKFAYLHAPSDVRDKVFD 112
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 12 ESINKTMDLNKIHTA-QENDSELQQLVENNSSSLKLQLLHFSDFRK 146
E + ++DL + + Q+ D E + V + SS LQ HF F+K
Sbjct: 255 EKHHSSLDLRRFFKSHQKTDKEKKPSVSKSKSSANLQDDHFGLFKK 300
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 36 LNKIHTAQENDSELQQLVENNSSSLKLQLLHFSDFRKKLYCDTSGTSPRL 185
L+ T E +S + + NNSSS + R+ + S TSP L
Sbjct: 177 LSSFKTLSERESHVANCLSNNSSSPRNMTEFLKHARRYISMQLSETSPCL 226
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 350 KSYTPHEVASACIYTTN-EQIFSCTCRYYWT 439
K + PH SA I + IF+C R+YW+
Sbjct: 104 KKFGPHYYLSAMIIGWSLVTIFTCFVRHYWS 134
>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 337 TVSVQKLHATRSRQCMHLHHQRADFLMYMSILLDHYRFRM 456
T SV+ ATR R+C L+ Q AD L+ ++++
Sbjct: 37 THSVKNALATRKRECRALYVQNADIHSEFEEFLNKLQYKI 76
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 42 KIHTAQENDSELQQLVENN--SSSLKLQLLHFSDFRKKLYCDTSGTSPRLYLPSE 200
K+ T + N Q++E+ + KL++ S RK L +SP+L+ PS+
Sbjct: 201 KLETEESNWKVRLQVLESKLATQDRKLRMQKKSTERKSLLVSPRVSSPKLFSPSK 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,425
Number of Sequences: 5004
Number of extensions: 47989
Number of successful extensions: 183
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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