Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F16
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 56 2e-08
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 56 2e-08
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 56 2e-08
Z82270-1|CAB63203.1| 914|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 30 1.1
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 28 4.2
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 28 4.2
AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical ... 28 5.6
U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine rece... 27 9.8
AF039048-7|AAB94234.2| 688|Caenorhabditis elegans Hypothetical ... 27 9.8
AC006831-1|AAF39995.1| 558|Caenorhabditis elegans Hypothetical ... 27 9.8
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Frame = +3
Query: 180 RLYLPSEFRRQAFDTIH-GL--NHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
R +P + R +H G+ H G K +++ ++ WP +R RTC C +
Sbjct: 1543 RSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCA 1602
Query: 351 KVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALED 524
H+K + TP F V D++ G +Y LT +D FT++ + + D
Sbjct: 1603 N--DHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPD 1659
Query: 525 IKAETVAKAFIRDW 566
KAETV KAF+ W
Sbjct: 1660 KKAETVLKAFVERW 1673
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Frame = +3
Query: 180 RLYLPSEFRRQAFDTIH-GL--NHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
R +P + R +H G+ H G K +++ ++ WP +R RTC C +
Sbjct: 1446 RSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCA 1505
Query: 351 KVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALED 524
H+K + TP F V D++ G +Y LT +D FT++ + + D
Sbjct: 1506 N--DHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPD 1562
Query: 525 IKAETVAKAFIRDW 566
KAETV KAF+ W
Sbjct: 1563 KKAETVLKAFVERW 1576
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Frame = +3
Query: 180 RLYLPSEFRRQAFDTIH-GL--NHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRS 350
R +P + R +H G+ H G K +++ ++ WP +R RTC C +
Sbjct: 1457 RSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCA 1516
Query: 351 KVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALED 524
H+K + TP F V D++ G +Y LT +D FT++ + + D
Sbjct: 1517 N--DHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPD 1573
Query: 525 IKAETVAKAFIRDW 566
KAETV KAF+ W
Sbjct: 1574 KKAETVLKAFVERW 1587
>Z82270-1|CAB63203.1| 914|Caenorhabditis elegans Hypothetical
protein F53H2.1 protein.
Length = 914
Score = 31.1 bits (67), Expect = 0.60
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 132 SDFRKKLYCDTSGTSPRLYLPSEFRRQAFDTIHGLN 239
++F++K+ C T SP+ Y P FRR D I LN
Sbjct: 224 NNFQQKMQCFTI-CSPQCYSPQNFRRANIDEISSLN 258
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 RTCVDCQRSKVTR----HTKSPVHAFTPPTSRFSHVHVDIIGPLPISN 455
R+CV CQ+ H K T P++ F HV +D +GP+ N
Sbjct: 1768 RSCVVCQKVNAKPFKYPHAKILPGCRTEPSTPFQHVGLDYLGPIAYKN 1815
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 RTCVDCQRSKVTR----HTKSPVHAFTPPTSRFSHVHVDIIGPLPISN 455
R+CV CQ+ H K T P++ F HV +D +GP+ N
Sbjct: 1768 RSCVVCQKVNAKPFKYPHAKILPGCRTEPSTPFQHVGLDYLGPIAYKN 1815
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 347 FKSYTPHEVASACIYTTNEQIFSCTCRYYWTTTDFEWFQVLLDSSRPVHTLA 502
F Y P +A ACI+ + + +T F WF+ S R V +A
Sbjct: 273 FMRYKPETIACACIFLAARTVENPIA---LPSTPFHWFEAFDTSDRDVEAIA 321
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 347 FKSYTPHEVASACIYTTNEQIFSCTCRYYWTTTDFEWFQVLLDSSRPVHTLA 502
F Y P +A ACI+ + + +T F WF+ S R V +A
Sbjct: 273 FMRYKPETIACACIFLAARTVENPIA---LPSTPFHWFEAFDTSDRDVEAIA 321
>AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical
protein T25D3.2 protein.
Length = 310
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 369 KSPVHAFTPPTSRFSH 416
K+PVH + PPTSRF+H
Sbjct: 61 KTPVH-YRPPTSRFAH 75
>U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine
receptor, class h protein30 protein.
Length = 340
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 225 IHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCQRSKVTR--HTKSPV 380
I GL H GA TT+ + + + + K LW CV C R + HT S +
Sbjct: 286 IFGLCH-GAATTLVHLLSNKPFRSTMKAQLLWVINCVTCSRHSSSNKVHTLSSI 338
>AF039048-7|AAB94234.2| 688|Caenorhabditis elegans Hypothetical
protein F16B4.3 protein.
Length = 688
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 476 CQAILETIRNR*WSNNIDMYMRKSARWWCKCMHWRLR 366
C+ IL T+RN S N+D ++ R+ K ++ R
Sbjct: 157 CERILSTMRNFAGSENLDSFLTSFVRYVAKSPNFSFR 193
>AC006831-1|AAF39995.1| 558|Caenorhabditis elegans Hypothetical
protein ZK121.2 protein.
Length = 558
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 93 NNSSSLKLQLLHFSDFRKKLYCDTSGTSPRLYLPSEFRR 209
+ S + QLL F K+L D S S R LPS + R
Sbjct: 155 HKSEEDRKQLLEFEKQLKELILDDSTQSKRFELPSSYHR 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,745,711
Number of Sequences: 27780
Number of extensions: 268402
Number of successful extensions: 888
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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