Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F15
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   306   1e-84
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   2.2  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.9  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   5.0  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   8.8  
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.8  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  306 bits (752), Expect = 1e-84
 Identities = 147/190 (77%), Positives = 164/190 (86%)
 Frame = +3

Query: 12  ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 191
           A  ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGE
Sbjct: 4   AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGE 63

Query: 192 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 371
           KGRRIRELT++VQKRF   E +VELYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA YG
Sbjct: 64  KGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYG 123

Query: 372 VLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGV 551
           VLR++ME+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D++++ATRHVLLRQGV
Sbjct: 124 VLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGV 183

Query: 552 LGIKVKIMLP 581
           LG+KVKIMLP
Sbjct: 184 LGVKVKIMLP 193


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 375  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 530
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 277 FSAYSSTDCSGILNRFCTTDVSSR 206
           + +Y S+DC G+L+R   TD   R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 159 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 335
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 336 IG 341
           +G
Sbjct: 784 LG 785


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 569 FHLNSKHSLSQQYVSSS 519
           FH NSKH L++ +VS+S
Sbjct: 815 FHKNSKHPLAKGFVSNS 831


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 438 GQRAKSMKFVDGLMIHSGDPCNDYVN 515
           G+R K + F D    H G P  DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 101 GWLLRCGGAC 130
           GWL  CGGAC
Sbjct: 70  GWLHNCGGAC 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,788
Number of Sequences: 5004
Number of extensions: 47512
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)