Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F15
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 342 1e-94
01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564... 29 3.0
10_08_0211 + 15899017-15901392 29 3.9
08_02_0478 + 17621678-17623768 28 5.2
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 5.2
01_06_1411 + 37127098-37128279 28 5.2
08_01_0346 - 3063440-3064189 28 6.8
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 28 6.8
04_03_0746 + 19247529-19247723,19247808-19248000,19248145-192482... 27 9.0
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 342 bits (841), Expect = 1e-94
Identities = 167/201 (83%), Positives = 178/201 (88%)
Frame = +3
Query: 15 TNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 194
T ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 5 TQISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEK 64
Query: 195 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 374
GRRIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 65 GRRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 124
Query: 375 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 554
LRF+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVL
Sbjct: 125 LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVL 184
Query: 555 GIKVKIMLPWDQQGKNGPKKP 617
GIKVKIML WD +GK GP P
Sbjct: 185 GIKVKIMLDWDPKGKQGPMTP 205
>01_06_1329 +
36354340-36354493,36355781-36355942,36356279-36356457,
36356719-36356918,36356938-36357014,36357110-36357111,
36357594-36357701,36357806-36358024,36358167-36358448
Length = 460
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -2
Query: 271 AYSSTDCSGILNRFCTTDVSSRILRPFSPS----TLCVLVAIIM 152
A++ TD +G+L+ CT DV S++ S S TLC+ II+
Sbjct: 332 AHALTDRNGLLSLLCTPDVGSKLGGRASASRYTNTLCITRTIII 375
>10_08_0211 + 15899017-15901392
Length = 791
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 109 TPVWRCVSHPYVQKSLLWPQ 168
T +W +SH +Q+S LWPQ
Sbjct: 696 TQIWAILSHCNIQESNLWPQ 715
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 459 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 554
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = +3
Query: 348 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 527
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 528 HVLLRQGVLGIKVKI 572
+L + + +++
Sbjct: 532 EILGEEVARNVTLRV 546
>01_06_1411 + 37127098-37128279
Length = 393
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 420 LLLHNREHQIP**NEGHHNTHD 355
L LH R HQ P GHH HD
Sbjct: 94 LHLHLRHHQFPVYRRGHHPDHD 115
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 312 AESLRYKLIGGLAVRRACYGVLR 380
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 27.9 bits (59), Expect = 6.8
Identities = 29/177 (16%), Positives = 72/177 (40%), Gaps = 2/177 (1%)
Frame = +3
Query: 51 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 230
GV+ E+ + +++AE+ V + + ++ ++ + +RE+ +++
Sbjct: 325 GVYLGEIARLVFQKMAEES-DIFGTAVDGLSTPFVLSTPNLAAIREDDSPDLREVGKILE 383
Query: 231 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG- 407
+ +P+ V L K+ R I + A R A ++ + + G G
Sbjct: 384 EHLKLPD--VPLKTRKLVARVSDIITRR-----------AARLAAAAIVAILQKIGCDGT 430
Query: 408 -CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 575
C +RG R +++ ++G + +Y+N A +L + + +++M
Sbjct: 431 LCGSTQVRTMRGVRRRTVVAIEGGLFEGYSVFREYLNEALVEILGEEIAATVSLRVM 487
>04_03_0746 +
19247529-19247723,19247808-19248000,19248145-19248230,
19248861-19249028,19249445-19249738
Length = 311
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 15 TNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEI 152
T+++ RK + A L E L ELA DG + EV + SEI
Sbjct: 149 TDVNHFRKLMASKAAAANLYETLRMELAGDGIAITEVIPGVVESEI 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,124,740
Number of Sequences: 37544
Number of extensions: 356240
Number of successful extensions: 836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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