Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F15
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       370   e-103
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)                    29   3.0  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_42484| Best HMM Match : Sulfate_transp (HMM E-Value=0.00024)        29   4.0  
SB_24618| Best HMM Match : 7tm_1 (HMM E-Value=0.017)                   28   7.0  
SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)                     27   9.2  
SB_59668| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)                    27   9.2  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  370 bits (911), Expect = e-103
 Identities = 179/203 (88%), Positives = 188/203 (92%)
 Frame = +3

Query: 9   MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 188
           MA  ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLG
Sbjct: 1   MAAQISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLG 60

Query: 189 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 368
           EKGRRIRELTSVVQKRF  PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACY 120

Query: 369 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG 548
           GVLRFIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P   YV+TA RHV LRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQG 180

Query: 549 VLGIKVKIMLPWDQQGKNGPKKP 617
           VLGIKVKIMLPWD  GK GPKKP
Sbjct: 181 VLGIKVKIMLPWDPTGKTGPKKP 203


>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
          Length = 383

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +3

Query: 75  EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 236
           E+L R++  D YS  E    +TP         +IMA R QSVL ++GR   +LT   Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230

Query: 237 FNIPEQSVELYA 272
           F+    SVE +A
Sbjct: 231 FDDLADSVEQFA 242


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +3

Query: 105  GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 284
            GY+  +     + S +++ A   +++  ++ + +RE    +QKRF   E+   +Y     
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000

Query: 285  TRGLCAIAQA 314
             RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010


>SB_42484| Best HMM Match : Sulfate_transp (HMM E-Value=0.00024)
          Length = 349

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 143 TYGCDTHLHTGVAILGQLPR 84
           TYG +TH    VA+LG++P+
Sbjct: 280 TYGAETHKKYDVAVLGEIPK 299


>SB_24618| Best HMM Match : 7tm_1 (HMM E-Value=0.017)
          Length = 192

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 526 LVAVLT*SLQGSPEWIIRPSTN 461
           LV VLT   + +P+W+IRP  N
Sbjct: 165 LVHVLTTCARSTPQWVIRPDIN 186


>SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)
          Length = 339

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 438 GQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 572
           G++      ++   IH G P  DY     +  L R+GV G+ V I
Sbjct: 25  GKKTAGRLRLERTQIHGGSPVIDYKVEVDQVKLAREGVTGVPVVI 69


>SB_59668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 219 SVVQKRFNIPEQSVELYAEKVATRGLCAI 305
           +++ + F  P    E +A K+ TRGLC I
Sbjct: 402 NILHRHFGYPVTFQEFFAIKLITRGLCRI 430


>SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)
          Length = 120

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +3

Query: 66  ELNEFLTRELAE-DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 242
           E+ E + + +AE +G SG EV+   ++ +  ++  +TQ    E  ++ +EL  + +KR N
Sbjct: 20  EVIEVVNKLIAEGEGESGNEVKENKVKKKPSVIK-QTQ----EDEKKTKELEELKEKRIN 74

Query: 243 IPE 251
           +P+
Sbjct: 75  LPQ 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,531,919
Number of Sequences: 59808
Number of extensions: 383471
Number of successful extensions: 927
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)