Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F15
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   328   2e-90
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    32   0.38 
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  328 bits (805), Expect = 2e-90
 Identities = 155/198 (78%), Positives = 177/198 (89%)
 Frame = +3

Query: 18  NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 197
           N++KK+K V  G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+G
Sbjct: 6   NVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERG 65

Query: 198 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 377
           RRI+ELTSVVQKRF   E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVL
Sbjct: 66  RRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVL 125

Query: 378 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLG 557
           RFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+  A RHV LRQGV+G
Sbjct: 126 RFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIG 185

Query: 558 IKVKIMLPWDQQGKNGPK 611
           IKVKIMLP+D +G+NGP+
Sbjct: 186 IKVKIMLPYDPRGQNGPR 203


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 6   RMATNISKKRKFVGDGVFKAELNEFLTRELAEDGY 110
           R++ +I KK  F GDG F     E    E+ +DGY
Sbjct: 888 RLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 6   RMATNISKKRKFVGDGVFKAELNEFLTRELAEDGY 110
           R++ +I KK  F GDG F     E    E+ +DGY
Sbjct: 888 RLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 171 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 290
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 93  LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 254
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 93  LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 254
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 301 AQSPRVATFSAYSSTDCSGILNRFCTTDVSSRILRPFSPSTLCVLVA 161
           + +P   T  AY  T  SG++   C+ D +    RP      C ++A
Sbjct: 114 SNTPTSTTTCAYIKTSSSGLVFDSCSIDANVLCDRPLQKQDYCSIIA 160


>U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical
           protein T07H6.5 protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 94  WPRMATPVWRCVS--HPYVQKSLLWPQGRRACLERKVVEFV 210
           W    +P  +CVS  HP ++  +LW + +R+   R V E+V
Sbjct: 501 WMPKVSP--KCVSQTHPMIEGKILWDRKKRSLPGRAVREYV 539


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,000,016
Number of Sequences: 27780
Number of extensions: 275553
Number of successful extensions: 737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)