Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F14
         (542 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   1.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   1.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.3  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   2.3  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.3  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.0  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 187 TTRIHTAHPGSAHARCAEISRQKSHTGSDTLHVNT 83
           T  + T H G    RC    R+ S + S T H+ T
Sbjct: 38  TAHVRT-HSGEKPFRCPVCDRRFSQSSSVTTHMRT 71



 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 184 TRIHTAHPGSAHARCAEISRQKSHTGSDTLHVNT 83
           T + T H G    RC + ++  S   + T HV T
Sbjct: 11  THLRT-HSGEKPYRCIDCNKSFSQAANLTAHVRT 43


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 187 TTRIHTAHPGSAHARCAEISRQKSHTGSDTLHVNT 83
           T  + T H G    RC    R+ S + S T H+ T
Sbjct: 294 TAHVRT-HSGEKPFRCPVCDRRFSQSSSVTTHMRT 327



 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 184 TRIHTAHPGSAHARCAEISRQKSHTGSDTLHVNT 83
           T + T H G    RC + ++  S   + T HV T
Sbjct: 267 THLRT-HSGEKPYRCIDCNKSFSQAANLTAHVRT 299


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -2

Query: 502 SRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCGH 335
           S+    + C    V+++   +  K H +V R +  D   A   C SL    ++ GH
Sbjct: 256 SKPFQCNKCDYTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKIHLRRYGH 311



 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 100 CPIQCVTFVLIFLHIGR 150
           C ++C   V  FLHI R
Sbjct: 504 CGVECSDKVSFFLHIAR 520


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -2

Query: 502 SRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCGH 335
           S+    + C    V+++   +  K H +V R +  D   A   C SL    ++ GH
Sbjct: 14  SKPFQCNKCDYTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKIHLRRYGH 69


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 460 SQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCGHGNA 326
           S  P   +   H  + +SATT+ P AA + +S S SS +    +A
Sbjct: 9   SMLPKYHQQFHHQQLFQSATTEAP-AAYSSSSPSGSSPQHSSSSA 52


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 460 SQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCGHGNA 326
           S  P   +   H  + +SATT+ P AA + +S S SS +    +A
Sbjct: 9   SMLPKYHQQFHHQQLFQSATTEAP-AAYSSSSPSGSSPQHSSSSA 52


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 351 EESDSEVQVIAAEGGSVVAERA 416
           E SDS VQ     G S+++ERA
Sbjct: 88  ESSDSLVQPRCPSGESMLSERA 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,654
Number of Sequences: 336
Number of extensions: 2440
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)