Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F14
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.34 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.8  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   2.4  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   3.1  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   5.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   5.5  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    25   5.5  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   7.2  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    25   9.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   9.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.5  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 23/83 (27%), Positives = 39/83 (46%)
 Frame = -2

Query: 538 SSRRSYACSAPRSRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLS 359
           SS  + + S   S +I +SS +  S S A + +       ++ S+ T P S++   + +S
Sbjct: 26  SSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVS 85

Query: 358 DSSQKCGHGNAGGYTQRESCTRT 290
            SSQ+    +A   T   S T T
Sbjct: 86  SSSQQSSSSSA-SLTSSSSATLT 107


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -2

Query: 490  LASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCGHGNAGGYTQ 311
            L+S     SVS+ PSR       +  +S    P + A+T  +  +  ++  H N GG  Q
Sbjct: 1339 LSSMLKGGSVSRTPSRQNSALRRE--QSVRAPPSNVAVTSANSFELLEEHDHDNDGG--Q 1394

Query: 310  RESCTRT 290
            ++S ++T
Sbjct: 1395 KDSNSKT 1401


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -2

Query: 388 SAAITCTSLSDSSQKCGHGNAGGYTQRESCTRTVCLEPCGGRQPHHLQGDGDQAE 224
           SA +  TS+S S+Q  G    G Y  R +      L P     PHH+Q  G   +
Sbjct: 248 SAGVYTTSISLSAQVSG--TTGEYWFRFATAGYTNLNPLMFALPHHMQSFGSDTQ 300


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -2

Query: 463 VSQAPSRARHKPHHDVARSAT--TDPPSAAITCTSLSDSSQK 344
           VSQ PS  R++ HH V    T     PS A +  S  D S K
Sbjct: 226 VSQYPSGHRYETHHSVHNLGTKRDSVPSGADSDLSFKDPSGK 267


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +3

Query: 222 HSAWSPSPCKWCGCRPPHGSRHTVRVQDSRCVYPPALPWPHFCEESDSEVQ 374
           H    P  C W GC         +R   S C +   LP+P  C   D E++
Sbjct: 107 HRKPKPYACTWEGCDECFSKHQQLRSHISAC-HTHLLPYP--CTYQDCELR 154


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 429 GLWRALLGACETDLRAQLDARM 494
           GL+R +L AC  +LR ++ ARM
Sbjct: 472 GLFRKVLFACPVELRPEVYARM 493


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
 Frame = +3

Query: 273 HGSRHTVRVQDSRCVYPPAL------PWPHFCE 353
           HG  H +     R V PPAL      PW HF +
Sbjct: 228 HGCHHFLPADKYRLVMPPALFLIFATPWYHFIQ 260


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = -2

Query: 541 ESSRRSYACSAPRSRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSL 362
           E + +S +  AP + ++  S+     V+  P+R+ + P+    R+++++   A     S 
Sbjct: 460 EKTGKSNSQQAPSNHVLSKSNTVPNLVTGFPTRSDNPPNEKRRRTSSSENSRALDIQLSA 519

Query: 361 SDS 353
           SDS
Sbjct: 520 SDS 522


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 472 RRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCG 338
           R     +  R RH+P+H V    ++D  S   +  S+  + +K G
Sbjct: 175 RAVTMDSEKRTRHRPNHLVDEFVSSDMSSVPQSMPSVGSNLEKRG 219


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -2

Query: 541 ESSRRSYACSAPRSRLILASSCARRSVSQAP-SRARHKPHHDVARSATTDPPSAAITCTS 365
           ES    YA  +P S   L  S   +S S +P S   H P +   +S    P ++    ++
Sbjct: 655 ESQFLEYANDSPNSSESL-ESLNNQSYSSSPYSVFSHPPPYMGRQSLNDSPQTSDFKASN 713

Query: 364 LSDSS 350
           L+DSS
Sbjct: 714 LNDSS 718


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/64 (21%), Positives = 28/64 (43%)
 Frame = -2

Query: 493 ILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCGHGNAGGYT 314
           +L ++ +  SVS   S +        + + TT P S++ + +S S SS      ++   +
Sbjct: 122 VLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSS 181

Query: 313 QRES 302
              S
Sbjct: 182 SSSS 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,895
Number of Sequences: 5004
Number of extensions: 35359
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)