Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F14
(542 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0) 30 1.1
SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3) 29 1.9
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_10818| Best HMM Match : PMP1_2 (HMM E-Value=2.3) 29 3.2
SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39) 29 3.2
SB_13669| Best HMM Match : zf-CCHC (HMM E-Value=1.3e-06) 28 4.3
SB_4543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08) 28 4.3
SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_2933| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_56918| Best HMM Match : zf-CCHC (HMM E-Value=7.4e-07) 28 5.7
SB_33240| Best HMM Match : DUF1087 (HMM E-Value=9.9) 28 5.7
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14) 28 5.7
SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_21743| Best HMM Match : rve (HMM E-Value=4e-17) 28 5.7
SB_19313| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-27) 28 5.7
SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07) 27 7.5
SB_6412| Best HMM Match : Extensin_2 (HMM E-Value=8.1) 27 7.5
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4) 27 9.9
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15) 27 9.9
SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 27 9.9
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_21674| Best HMM Match : LIM (HMM E-Value=0.44) 27 9.9
SB_20014| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18) 27 9.9
SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25) 27 9.9
SB_5047| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.18) 27 9.9
>SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 31.9 bits (69), Expect = 0.35
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -2
Query: 448 SRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCGHGNAGGYTQRESCTRTVCLEPCG 269
SR + H + D P A+ + T ++S+ K H + G+T+R + TR L+P G
Sbjct: 33 SRISSRHHPPSSHRTVHDAPRASESATIANESTTKT-HAESSGWTKRSARTRE-RLQPIG 90
Query: 268 GRQPHHLQGD 239
H + D
Sbjct: 91 ADASHTITHD 100
>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2147
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 541 ESSRRSYACSAPR-SRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTS 365
+ SR S SA + SR +S + S + H+P SAT +PPS+ +T +
Sbjct: 1101 QESRSSQVTSATQESRSSQVTSATQEPPSTQVTSVTHEPPSSQVTSATQEPPSSQVTSVT 1160
Query: 364 LSDSSQK 344
S +
Sbjct: 1161 QEPRSSQ 1167
Score = 29.9 bits (64), Expect = 1.4
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = -2
Query: 541 ESSRRSYACSAPR-SRLILASSCARRSVS-QAPSRARHKPHHDVARSATTDPPSAAITC- 371
+ SR S S + SR +S + S Q S + P V SAT +PPS +T
Sbjct: 1365 QESRSSQVTSVTQESRSSQVTSATQEPPSTQVTSVTQESPSSQVT-SATQEPPSTQVTSV 1423
Query: 370 TSLSDSSQKCGHGNAGGYTQRES 302
T S SQK G GG + + S
Sbjct: 1424 TQESRYSQKKKGGKCGGKSAKVS 1446
>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1250
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = -2
Query: 457 QAPSRARHKPHHDVARSATTDPPSAAITCTS--LSDSSQKCGHGNAGGYTQRESCTRTVC 284
+APSR R + A + +TC L+ + KC + AG Q RT
Sbjct: 183 RAPSRCRDCDSYVYFNGAECE--QCGLTCHKRCLARLTNKCSYKGAGTENQLTDYNRTRR 240
Query: 283 LEPCGGRQPHHLQGDGDQAECDP 215
+ G HHL Q EC P
Sbjct: 241 MTTFGVDFYHHLLATDKQGECVP 263
>SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 261 SRTTCKVTATKPSATHQPRRTDRYERRGYILLTPALLT 148
SR C T K S THQPR+ R ++ +P L++
Sbjct: 628 SRRACAPTMPKASHTHQPRKATLLGRLAWLSGSPVLVS 665
>SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)
Length = 374
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/64 (32%), Positives = 26/64 (40%)
Frame = -2
Query: 436 HKPHHDVARSATTDPPSAAITCTSLSDSSQKCGHGNAGGYTQRESCTRTVCLEPCGGRQP 257
H+ A++A PP A+ TCT Q CG G SC R V + QP
Sbjct: 179 HEDRSAPAKAAPPSPPEASATCT------QVCGGEGTG-----RSCARIVLVNLTHESQP 227
Query: 256 HHLQ 245
H Q
Sbjct: 228 HKKQ 231
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = -3
Query: 336 TVTQAGTRSGSPAREQ----CASSRAEAGSRTTCKVTATKPSATHQPR 205
T T+ GT++G+ A + AS+ A+ ++TT K T+T + +PR
Sbjct: 6356 TTTRPGTKAGAAATAKPPTAAASAAAKIPAKTTAKKTSTTTTTKPKPR 6403
>SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +3
Query: 258 GCRPPHGSRHTVRVQDSRCVYPPALPWPHFCEESDSEVQVIAAEGGSVVAERATSWCGLW 437
GC H H V+D + Y + C E E++ + VV+E+ T + +
Sbjct: 326 GCNNKHLISHKQSVEDMKDKYSSLEETDNLCREEIEEMRYYYEKCPEVVSEQKTVYVEIA 385
Query: 438 RALLGACETDLRA 476
L+ DL+A
Sbjct: 386 LYLINLHSVDLKA 398
>SB_10818| Best HMM Match : PMP1_2 (HMM E-Value=2.3)
Length = 414
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = +3
Query: 237 PSPCKWCGCRPPHGSRHTVRVQDSRCVYPPALPWPHFCEESDSEVQVIAAEGGSVVAERA 416
P+ C C H S H + VQ C +L W H ++ IA+ + R
Sbjct: 6 PAKCSRCAYAHKHRSHHQMYVQTEPCKVCDSLRWNHLGVSTEIHDSDIASSWFNQCGSRP 65
Query: 417 TSWCGLWRALL 449
S LW ++
Sbjct: 66 VSL--LWLLII 74
>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
Length = 1607
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/64 (32%), Positives = 25/64 (39%)
Frame = -2
Query: 436 HKPHHDVARSATTDPPSAAITCTSLSDSSQKCGHGNAGGYTQRESCTRTVCLEPCGGRQP 257
H+ A+ A PP A+ TCT Q CG G SC R V + QP
Sbjct: 650 HEDRSAPAKPAPPSPPEASATCT------QVCGGEGTG-----RSCARIVLVNLTHESQP 698
Query: 256 HHLQ 245
H Q
Sbjct: 699 HKKQ 702
>SB_13669| Best HMM Match : zf-CCHC (HMM E-Value=1.3e-06)
Length = 385
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 216 GSHSAWSPSPCKWCGCRPPHGSRHTVRVQDSRCV 317
GSH+ S +PC WCG + H + +D++C+
Sbjct: 245 GSHN--SSTPCHWCGKKADH-VKKDCPAKDAKCL 275
>SB_4543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 208 APHRQI*TTRIHTAHPGSAHARCAEISRQKSHTGSDTLHVNTTKYLLIES 59
AP R+ T+H +A+ C + S+ K +G+ T+ ++ IES
Sbjct: 584 APEDTFGAVRLETSHAINANDTCLDFSKWKEFSGTATICAGMSRDQAIES 633
>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
Length = 924
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -2
Query: 541 ESSRRSYACSAPRSRLILASS---CARRSVSQAPSRARHKPHHDVARSATTDPPSAA 380
E+ R C R R +SS C ++ +PS + H+ H ++T+DP + A
Sbjct: 199 EADRFMQFCQVARVRSWSSSSSSACGSSAMQASPSNSPHEKSHAQPENSTSDPSNRA 255
>SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 876
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 348 CEESDSEVQVIAAEGGSVVAERATSWCGLWRALLGACETDLRAQLDAR 491
C++ +E V+ A S + E+A+S ++A +G +TD L ++
Sbjct: 91 CDDLSNEENVLCARNSSQIIEKASSTSVFFKANIGLRKTDTSLGLTSK 138
>SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 403 TTDPPSAAITCTSLSDSSQKCGHGNAGGYTQRESCTRTVCLEPC 272
T +P + T + SD+ +KCG GY R + C + C
Sbjct: 645 TQEPTTERPTPSGCSDTRKKCGAWARAGYCHRFQYVKDNCKKSC 688
>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 76 IWLCLRAKCPIQCVTFVLIFL-HIGREQSRGEQYVSASFIS 195
+WL LR C ++C+ +F+ H+ Q R + +FI+
Sbjct: 128 LWLTLRVHCTLRCLGTAYMFINHVHVHQPRTRSSTTYTFIN 168
>SB_2933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 255 TTCKVTATKPSATHQPRRTDRYERRGYILLTPALLT 148
TTC++ +PS+ +P R+ RG L++ +L T
Sbjct: 2 TTCQLANQRPSSDSEPSRSRNCASRGQSLVSTSLAT 37
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 216 GSHSAWSPSPCKWCGCRPPHGSRHTVRVQDSRC 314
GSH+ S +PC WCG + H + +D++C
Sbjct: 2159 GSHN--SSTPCHWCGKKADH-VKKDCPAKDAKC 2188
>SB_56918| Best HMM Match : zf-CCHC (HMM E-Value=7.4e-07)
Length = 517
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 216 GSHSAWSPSPCKWCGCRPPHGSRHTVRVQDSRC 314
GSH+ S +PC WCG + H + +D++C
Sbjct: 106 GSHN--SSTPCHWCGKKADH-VKKDCPAKDAKC 135
>SB_33240| Best HMM Match : DUF1087 (HMM E-Value=9.9)
Length = 183
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 268 GRQPHHLQGDGDQAECDPPAAPHRQI*TTRIHTAHPGSAHAR 143
GR+ HH D +ECDP A + R HTA +A R
Sbjct: 69 GRR-HHRDPDACSSECDPEAKGGEESSAARDHTAAVTAAQDR 109
>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
Length = 506
Score = 27.9 bits (59), Expect = 5.7
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -2
Query: 394 PPSAAITCTSLSDSSQ-KCGH--GNAGGYTQRESCTRTVCLEPC-GGRQPHH 251
PP C + SS C H GNAG TQ + T+TV E C GGR P+H
Sbjct: 86 PPCPPRNCAVSAWSSWGPCTHQCGNAG--TQTRTRTKTVS-EACPGGRCPYH 134
>SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 216 GSHSAWSPSPCKWCGCRPPHGSRHTVRVQDSRC 314
GSH+ S +PC WCG + H + +D++C
Sbjct: 242 GSHN--SSTPCHWCGKKADH-VKKDCPAKDAKC 271
>SB_21743| Best HMM Match : rve (HMM E-Value=4e-17)
Length = 865
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 216 GSHSAWSPSPCKWCGCRPPHGSRHTVRVQDSRC 314
GSH+ S +PC WCG + H + +D++C
Sbjct: 245 GSHN--SSTPCHWCGKKADH-VKKDCPAKDAKC 274
>SB_19313| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-27)
Length = 545
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -2
Query: 538 SSRRSYACSAPRSRLIL--ASSCARRSVSQAPSRARHKPH 425
SSR + C +P ++ AS A +SVSQ+ SRA +PH
Sbjct: 484 SSRGTLWCHSPANQPASQPASQPASQSVSQSASRATPRPH 523
>SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)
Length = 229
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -2
Query: 295 RTVCLEPCGGRQPHHLQGDGDQA-ECDPPAAPHRQI*TTRIHTAHPGSAHARCAEISRQK 119
+ V + CG R H + G++ +C+ + + H H G +C++ +
Sbjct: 14 KRVSIVICGNRNQHREKHYGNKPFKCEQCGKCFTEAARLKDHILHTGEKPYQCSQCGKCS 73
Query: 118 SHTGSDTLHV 89
+ +G+ +HV
Sbjct: 74 AKSGNHKIHV 83
>SB_6412| Best HMM Match : Extensin_2 (HMM E-Value=8.1)
Length = 329
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 228 PSATHQPRRTDRYERRGYILLTPALLTPDVQKYQDKSHTLDRTLCT*TQPNIY 70
P H P TDRY + Y L +YQ KS+T + L T P Y
Sbjct: 198 PLGPHLPHPTDRYPTKSYTSLKDLPYFTLPIEYQTKSYTPLKDLTYLTPPIEY 250
>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
Length = 242
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 451 PSRARHKPHHDVARSATTDP 392
P+R RH+PH D R+ TDP
Sbjct: 140 PTRTRHEPHTDTTRT-HTDP 158
>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 330 TQAGTRSGSPAREQCASSRAEAGSRTTCKVTATKPSATHQPRR 202
T A R+G Q A + G+ C++TA + QPR+
Sbjct: 247 TAAARRAGPRQPRQHAQAPDNRGNTRRCQITAATRAGARQPRQ 289
>SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15)
Length = 111
Score = 27.1 bits (57), Expect = 9.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 252 WCGCRPPHGSRHTV 293
WC CR PHG+R +
Sbjct: 47 WCICRKPHGNRFMI 60
>SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 1431
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +3
Query: 177 IRVVHIC-RCGAAGGSHSAWSPSPCKWCGCRPPHG 278
I VVH C RCG + G +C C+ HG
Sbjct: 167 IYVVHCCMRCGISSGKMQTLLAVVLLFCHCQTAHG 201
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = -2
Query: 433 KPHHDVARSATTDPPSAA----ITCTSLSDSSQKCGHGNAGGYTQRESCTRTVCLEPCGG 266
+ H +S TTDP + + T D S GHG + TQ + +VC G
Sbjct: 589 RQHSPREKSYTTDPVAITSLTDLKVTEGKDLSLLRGHGMSPYCTQYVTLLHSVCHPTAHG 648
Query: 265 RQPH 254
PH
Sbjct: 649 MSPH 652
>SB_21674| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 885
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 315 RSGSPAREQCASSRAEAGSRTTCKVTATKPSATHQPR 205
+SGS ARE +S + R CK +++P + R
Sbjct: 559 KSGSLAREPSTASAVRSSGRNRCKDASSRPRRIGEDR 595
>SB_20014| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)
Length = 184
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 345 NVATVTQAGTRSGSPAREQCASSRAEAGSRTTCKVTATK 229
N + AG A QC S+ +G+R TC +TK
Sbjct: 122 NCSFYCSAGYEIAGSASRQCLSNSQWSGARATCNGESTK 160
>SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)
Length = 455
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 246 KVTATKPSATHQPRRTDRYERRGYILL 166
KV A PSA + R DR RRG + L
Sbjct: 15 KVIAVPPSADYTIHRRDRQSRRGGVFL 41
>SB_5047| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.18)
Length = 297
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = -2
Query: 313 QRESCTRTVCLEPCGGRQPHHLQGDGDQAE---CDPPAAPHRQI*TTRIHTA--HPGSAH 149
Q+E+ ++ E GRQ H++ +G + +P + H++ P S
Sbjct: 129 QQEALVSSLNAERSHGRQTPHVETNGTEVPGKLTKEKFSPWGEKVEVSAHSSGVKPASRF 188
Query: 148 ARCAEISRQKSHTGSDTLHVNTTK 77
R++SH SDT H +K
Sbjct: 189 GPLTSTPRKQSHDSSDTSHATNSK 212
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,675
Number of Sequences: 59808
Number of extensions: 351723
Number of successful extensions: 1339
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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