Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F14
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL032632-7|CAA21586.1|  313|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    29   2.9  
U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -2

Query: 391 PSAAITCTSLSDSSQKCGHGNAGGY---TQRESCTRTVCLEPCGGRQPHHLQGDGDQAEC 221
           P+ A TC+   D   +CG G +  Y   + ++SC  +   E C G   + L  +  Q  C
Sbjct: 548 PTKAFTCSLNPDKGVQCGSGRSYRYYFNSNKQSC-ESFQYEGCDGNANNFLTSEDCQHYC 606

Query: 220 DPPAAPH 200
                P+
Sbjct: 607 GVGGCPN 613


>AL032632-7|CAA21586.1|  313|Caenorhabditis elegans Hypothetical
           protein Y11D7A.11 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
 Frame = -2

Query: 388 SAAITCTSLSDSSQKCGHGNAG--GYTQRESCTRTVCLEPCG--GRQPHHLQG----DGD 233
           +A+ + +S SDS   CG G AG  G+  R    R     P G  GR    L G    DG 
Sbjct: 106 AASTSSSSSSDSCCSCGIGLAGPAGFPGRPG--RDGIDGPAGKPGRDGQDLDGESSSDGS 163

Query: 232 QAECDPPAAP 203
           Q E D PA P
Sbjct: 164 QIELDCPAGP 173


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
           protein ZC84.1 protein.
          Length = 1556

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -2

Query: 391 PSAAITCTSLSDSSQKCGHGNAGGY---TQRESCTRTVCLEPCGGRQPHHLQGDGDQAEC 221
           P+ A TC+  +DS  +CG G+   Y    Q ++C  +     C G   +    D  ++ C
Sbjct: 624 PTKAFTCSLNTDSGIQCGAGSTFKYYYNPQTQNC-ESFQYNGCDGNSNNFANRDACESYC 682

Query: 220 DPPAAPH 200
                P+
Sbjct: 683 SVGGCPN 689


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
            protein Y67D8A.1 protein.
          Length = 1020

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
 Frame = -2

Query: 487  ASSCARRSVSQAPSRARHKPHHD--------VARSATTDPPSAAITCTSLSDSSQKCGHG 332
            +S   +R V  + S ++H  HH         +A   T +P S  +T  +++ S       
Sbjct: 947  SSEKKKRHVGGSSSSSQHHHHHQQQQTPLLRLATPLTPEPSSGTVTPRAITPSPLSSSLN 1006

Query: 331  NAGGYTQRESC 299
             +GG  Q ESC
Sbjct: 1007 TSGGGGQDESC 1017


>U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical
           protein F41F3.8 protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/66 (30%), Positives = 22/66 (33%)
 Frame = -2

Query: 517 CSAPRSRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCG 338
           C      L L   CA R    AP  A   P           PP    TC S + +   CG
Sbjct: 24  CGCGGPSLSLCGGCAPRPRVAAPPFAPPPPPSPPLPPKCECPPP---TCNSCAPAPSSCG 80

Query: 337 HGNAGG 320
            G  GG
Sbjct: 81  CGGGGG 86


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 333 VTQAGTRSGSPAREQCASSRAEAGSRTTCKVTATKP 226
           ++Q G++SGSP R Q   S+  + S+    + A KP
Sbjct: 244 MSQTGSQSGSPTRRQSGGSKERSPSQPDIHIVA-KP 278


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical protein
            F57C7.1b protein.
          Length = 1087

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -2

Query: 541  ESSRRSYACSAPRSRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSL 362
            E SR +   + PR  L L+ + +  S    PS+A+       ++S  + P     T +  
Sbjct: 1007 EPSRSNSNVAGPRRALELSGNSSSASTPAGPSKAQPAVVRPSSKSVASKPAYTKRTLSES 1066

Query: 361  SDSSQKCG 338
            S SS   G
Sbjct: 1067 SSSSDSNG 1074


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
            F57C7.1a protein.
          Length = 1209

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -2

Query: 541  ESSRRSYACSAPRSRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSL 362
            E SR +   + PR  L L+ + +  S    PS+A+       ++S  + P     T +  
Sbjct: 1007 EPSRSNSNVAGPRRALELSGNSSSASTPAGPSKAQPAVVRPSSKSVASKPAYTKRTLSES 1066

Query: 361  SDSSQKCG 338
            S SS   G
Sbjct: 1067 SSSSDSNG 1074


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,029,079
Number of Sequences: 27780
Number of extensions: 240580
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)