Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F11
(375 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55846| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.93
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_13836| Best HMM Match : HEAT (HMM E-Value=0.39) 28 2.1
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022) 28 2.8
SB_23091| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06) 28 2.8
SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066) 27 3.7
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43) 27 5.0
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 27 5.0
SB_5326| Best HMM Match : HEAT (HMM E-Value=3.1e-05) 27 5.0
SB_41183| Best HMM Match : Sec_GG (HMM E-Value=4.9) 27 6.5
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 27 6.5
SB_49195| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_45390| Best HMM Match : Glyco_transf_10 (HMM E-Value=2.5e-20) 26 8.7
SB_40408| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7) 26 8.7
SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 26 8.7
>SB_55846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.5 bits (63), Expect = 0.93
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 246 LCSRRTLPSCEWLHRPRTSWRS--QQHVRLQGPRPLSRA 136
LC R LP EWLH+ S R +++V LQ P A
Sbjct: 30 LCQRLKLPKSEWLHQFVRSLREPLKEYVVLQSPADFETA 68
>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1958
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 246 LCSRRTLPSCEWLHRPRTSWRS--QQHVRLQGPRPLSRA 136
LC R LP EWLH+ R +++V LQ P A
Sbjct: 1301 LCQRLKLPKSEWLHQFVCGLRGPLKEYVLLQSPADFETA 1339
>SB_13836| Best HMM Match : HEAT (HMM E-Value=0.39)
Length = 400
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 123 GPSHGSDDYS-PSISLGSTSQRIHQRRSAFCVSKLHTDRAS 4
G +HG + + PS LGS+ HQR S VSKL TD+ S
Sbjct: 260 GVNHGWNSHRRPSSQLGSSK---HQRISIRAVSKLLTDQPS 297
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = -1
Query: 201 PRTSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDD--YSPSISLGSTSQRIHQRRSAF 37
PRT + +GP P A P R P DD +SP + S R +R F
Sbjct: 459 PRTPPGDPTYEHTRGPPPERHARPPRTPPSDHDDRPFSPIEQEANRSNRFSERDGEF 515
>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 246 LCSRRTLPSCEWLHRPRTSWRS--QQHVRLQGPRPLSRA 136
LC R LP EWLH+ R +++V LQ P A
Sbjct: 288 LCQRLKLPKSEWLHQFVRGLRGPLKEYVVLQSPADFETA 326
>SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)
Length = 222
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 246 LCSRRTLPSCEWLHRPRTSWRS--QQHVRLQGPRPLSRA 136
LC R LP EWLH+ R +++V LQ P A
Sbjct: 23 LCQRLKLPKSEWLHQFVRGLRGPLKEYVVLQSPADFETA 61
>SB_23091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 246 LCSRRTLPSCEWLHRPRTSWRS--QQHVRLQGPRPLSRA 136
LC R LP EWLH+ R +++V LQ P A
Sbjct: 82 LCQRLKLPKSEWLHQFVRGLRGPLKEYVILQSPADFETA 120
>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
Length = 882
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 246 LCSRRTLPSCEWLHRPRTSWRS--QQHVRLQGPRPLSRA 136
LC R LP EWLH+ R +++V LQ P A
Sbjct: 186 LCQRLKLPKSEWLHQFVRGLRGPLKEYVVLQSPADFETA 224
>SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 246 LCSRRTLPSCEWLHRPRTSWRS--QQHVRLQGPRPLSRA 136
LC R LP EWLH+ R +++V LQ P A
Sbjct: 68 LCQRLKLPKSEWLHQFVRGLRGPLKEYVVLQSPADFETA 106
>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 246 LCSRRTLPSCEWLHRPRTSWRS--QQHVRLQGP 154
LC R LP+ EWLH+ R +++V LQ P
Sbjct: 77 LCQRLKLPNSEWLHQFVRGLRGPLKEYVVLQSP 109
>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 670
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 246 LCSRRTLPSCEWLHRPRTSWRS--QQHVRLQGPRPLSRA 136
LC R LP EWLH+ R +++V LQ P A
Sbjct: 84 LCQRLKLPKSEWLHQFVRGLRGPLKEYVVLQSPADFETA 122
>SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066)
Length = 727
Score = 27.5 bits (58), Expect = 3.7
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -1
Query: 237 RRTLPSCEWLHRPRTSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRI 58
+ T S EW +PR +WRS + SR A M P D S++ G+ S
Sbjct: 440 QNTESSDEW--KPRHAWRSAGSPAMADTIGRSRHAGMSIPIDTMDQDLQSVTSGTQSHMT 497
Query: 57 HQRR---SAFCV 31
H+ S +CV
Sbjct: 498 HRAEELSSEWCV 509
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 27.1 bits (57), Expect = 5.0
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = -1
Query: 222 SCEWLHRPRTSWRSQQHVRLQGPR--PLSRAAPM-RGPSHGSDDYSPSISLGSTSQRIHQ 52
S +W R R +GP+ PL A R PS G DD P G +R HQ
Sbjct: 504 SNDWDRRSLDKMSRGPQYRRRGPQTPPLEDFAQFERSPSKGMDDEGPRKRRGQYRKRDHQ 563
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 268 PSFLVSLTMQSSDSPILRMAPQTTYILEESAARPVAGSTSAIT 140
P V+++ Q +P + +AP+TT + E + A T T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438
>SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)
Length = 822
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 215 NGSTDHVHLGGVSSTSGCRVHVRYHELHRCVVLRMDQTITRR 90
NGS D +H G SS + R+ R R M+ T +R
Sbjct: 94 NGSIDKIHAGKTSSEASVRLAQRVETQPRITTNSMESTNMKR 135
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 241 QSSDSPILRMAPQTTYILEESAA--RPVAGSTSAITSCTDA 125
+++D+P + MAP+TT +E + A A T+ TDA
Sbjct: 925 ETTDAPAITMAPETTDAIETTMATETTAAQETTVAPEITDA 965
>SB_5326| Best HMM Match : HEAT (HMM E-Value=3.1e-05)
Length = 538
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 132 PMRGPSHGSDDYSPSISLGSTSQRIHQRR 46
P R PSH +D Y+P + G +Q H R
Sbjct: 240 PDRMPSHFNDTYTPIAAAGGQAQVAHLAR 268
>SB_41183| Best HMM Match : Sec_GG (HMM E-Value=4.9)
Length = 198
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 143 DSGRGPCNRTCC*LLQDVRGLWSHSQDGRVRRLH 244
D GRGPC+R C L+ + GR+ +H
Sbjct: 138 DEGRGPCSRRRCVLISEDNVTRCKWPLGRIEAVH 171
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -3
Query: 253 SLTMQSSDSPILRMAPQTTYILEESAA 173
++T +++ +P +AP+TT +LE SAA
Sbjct: 6 TVTAETTAAPETTVAPETTAVLETSAA 32
>SB_49195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 144 SRAAPMRGPSHGSDDYSPSISLGSTS 67
SRA +R PSHGS D S S ++ S
Sbjct: 32 SRAPSLRIPSHGSSDDSHSKAINDIS 57
>SB_45390| Best HMM Match : Glyco_transf_10 (HMM E-Value=2.5e-20)
Length = 435
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 143 HELHRCVVLRMDQTITRRAFPWAVQVNEF 57
H HR VVL+ R+ +PW ++F
Sbjct: 87 HSHHRKVVLQYTAVFDRKPWPWMENTDQF 115
>SB_40408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 33 HKMQNDAGEFVDLYCPRKCSAS-NRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVC 206
HK+ AGE C ++C S RLI A ++ + + VI +D R + +K + C
Sbjct: 22 HKLGEKAGEHQASKCHQECMISGQRLIQAIENPA-KSVITVLDEEKRRNIERNKHIIKC 79
>SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)
Length = 483
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 204 RPRTSWRSQQHVRLQGPRPLSRAAPMRGPSH 112
RPR ++ S + RL P PL + P P H
Sbjct: 94 RPRFTFFSPKDNRLPSPPPLLKQLPFFSPKH 124
>SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 102 RLIHAKDHASVQLVIADVDPATGR 173
R+ H +HA Q++ A +DP TG+
Sbjct: 44 RVHHGINHAKSQILTAKLDPLTGK 67
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 226 PILRMAPQTTYILEESAARPVAGSTSAITSCTD 128
P + QT+Y ES P+ TSA SC D
Sbjct: 436 PNMTWMNQTSYKCSESFINPLTNRTSAKCSCQD 468
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,192,110
Number of Sequences: 59808
Number of extensions: 234128
Number of successful extensions: 4224
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4221
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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