Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F09
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 195 1e-50
11_01_0155 - 1287003-1287452 195 1e-50
03_06_0097 - 31632238-31632525,31633386-31633769 38 0.003
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.004
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 29 1.2
11_01_0523 - 4109070-4109984,4110532-4110936 28 3.6
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 3.6
04_04_1233 + 31966790-31967095,31967212-31967289,31967335-319673... 27 8.3
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 27 8.3
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029 27 8.3
>12_01_0152 - 1168928-1169377
Length = 149
Score = 195 bits (476), Expect = 1e-50
Identities = 86/133 (64%), Positives = 109/133 (81%)
Frame = +2
Query: 29 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 208
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 209 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 389 PRRCEPKKFGGPG 427
PRRCEPKKFGG G
Sbjct: 127 PRRCEPKKFGGRG 139
>11_01_0155 - 1287003-1287452
Length = 149
Score = 195 bits (476), Expect = 1e-50
Identities = 86/133 (64%), Positives = 109/133 (81%)
Frame = +2
Query: 29 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 208
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 209 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 389 PRRCEPKKFGGPG 427
PRRCEPKKFGG G
Sbjct: 127 PRRCEPKKFGGRG 139
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 37.9 bits (84), Expect = 0.003
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Frame = +2
Query: 41 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 211
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 212 GVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 391
D+ V V GGG Q AI +++AL+ + A+K ++ LL D
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201
Query: 392 RRCEPKKFG 418
R E KK G
Sbjct: 202 RIVERKKAG 210
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 37.5 bits (83), Expect = 0.004
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +2
Query: 59 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 238
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 239 GGGHVAQVYAIRQAISKAL 295
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 76 NCGSILQTRTWSVACKWTPPRPGRTQTSS 162
+C S +Q R+ SV W PP G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 239 GGGHVAQVYAIRQAISKALIAFY 307
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 122 NGRPLDLVEPRLLQYKLQEPILLL 193
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>04_04_1233 +
31966790-31967095,31967212-31967289,31967335-31967355,
31967390-31967557
Length = 190
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 139 VEGASIYTQHSMSSFAVCYRSCSFLTAE 56
+ G+S ++ SSFA Y SF+T+E
Sbjct: 51 ISGSSSFSSGFSSSFATSYDDASFITSE 78
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 76 NCGSILQTRTWSVACKWTPPRPGRTQTSS 162
+C S+++ + S+ W PP G+T+T S
Sbjct: 301 DCVSVMENQLSSLKLIWGPPGTGKTKTIS 329
>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
Length = 80
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +1
Query: 70 NCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTTGTYPFARQG 201
NC CGS Q CK++ P T T T A G
Sbjct: 7 NCGCGSSCQCGNGCGGCKYSEVEPTTTTTFLADATNKGSGAASG 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,464,297
Number of Sequences: 37544
Number of extensions: 281400
Number of successful extensions: 769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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