Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F09
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   1e-38
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   4e-04
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.099
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)               32   0.17 
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)                    27   6.5  
SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19)                  27   8.6  
SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)              27   8.6  
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)                   27   8.6  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  155 bits (377), Expect = 1e-38
 Identities = 71/87 (81%), Positives = 81/87 (93%)
 Frame = +2

Query: 167 KLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 346
           K++EPILLLGKE+F GVDIRV VKGGGH +++YAIRQAISK+L+A+YQKYVDE SKKEI+
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 347 DILVQYDRSLLVADPRRCEPKKFGGPG 427
           DILVQYDRSLLVADPRR E KKFGGPG
Sbjct: 71  DILVQYDRSLLVADPRRTEAKKFGGPG 97


>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 34/99 (34%), Positives = 48/99 (48%)
 Frame = +2

Query: 59  GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 238
           G +K + A A+  +G G + VN RP      RL Q K Q        +     D    V 
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396

Query: 239 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 355
           GGG   Q  AIR AIS+AL+ F + ++ E  ++EI + L
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHL-EPLQEEIPESL 434


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.1 bits (72), Expect = 0.099
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 293 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 403
           ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
          Length = 391

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +2

Query: 218 DIRVTVKGGGHVAQVYAIRQAISKALIAF 304
           DI+V V GGG   Q  AI+  I++ALI F
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF 351


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = +2

Query: 236 KGGGHVAQ--VYAIRQAISKALIAFYQKYV-DEASKKEIKDILVQYDRSLLVADPRRCEP 406
           K GGH++Q  +  I Q   K L A + K + DE  K++ K+I V+ +RS +    ++ EP
Sbjct: 91  KLGGHLSQPKLKKITQVNKKKLRATHHKAILDEIMKEKAKEIDVKKERSTISRRGKKREP 150

Query: 407 K 409
           +
Sbjct: 151 E 151


>SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)
          Length = 273

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 115 ACKWTPP--RPGRTQTSSVQTTGTYPFARQGKVLWCGY*SDCKRWW 246
           +C W  P  +   TQT  VQT     + R      CG   DC+RWW
Sbjct: 168 SCSWHAPWDKLTLTQTKGVQTV----YKRN-----CGCRVDCQRWW 204


>SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19)
          Length = 241

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 43  SRTSFRP*ENCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTTG 177
           S  S  P  NC C S  +   W   CK       +TQ S VQ  G
Sbjct: 171 SARSLCPAYNCECNSCHKLHHWERVCK----SKSKTQPSKVQHKG 211


>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 2   HEAAVQEARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNG 127
           HEA V +A +  IQ+V VFG K    + +Y   G G++   G
Sbjct: 151 HEATVSQAPKGFIQSVGVFGSKYILYSHSYL--GLGLMSARG 190


>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
          Length = 906

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 WSVACKWTPPRPGRTQTSSVQTTGTYPFARQ 198
           W+ + K  PPRP    TS  + +G+ P +R+
Sbjct: 703 WTGSIKKIPPRPSSDLTSDQEESGSDPPSRE 733


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,871
Number of Sequences: 59808
Number of extensions: 313179
Number of successful extensions: 712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)