Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F07
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   4.2  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   4.2  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   4.2  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   5.5  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   5.5  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   5.5  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    25   7.3  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    24   9.6  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    24   9.6  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  KIKYYIVLFHIFSYNFLAQ*QW 82
           ++  Y+ LF IF Y+FL   +W
Sbjct: 282 RLLIYVPLFFIFVYSFLGHKEW 303


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 439 KVFLSVISSGIRRNIFFRALDFLFSSW 359
           K+    +SSG  +N++F+ +DFL + W
Sbjct: 553 KLLTLKLSSG-NKNLYFKEIDFLENEW 578


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +3

Query: 270 NMNESLLRL--QGTLTEAECADLRLNRSE--EAFQELNKKSSALKKILRRIPDEITDR 431
           N+ E ++ L  + T      ++ R+ RSE  EA + L   S+ LK  L + P E+ +R
Sbjct: 475 NLEEGMVMLNKENTKLSEALSNHRVTRSEMEEATEILKNNSADLKAQLEKQPQELENR 532


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +3

Query: 207 AVPGLNYDLVAGIMRRADIPVNMNESLLRLQGTLTEAECADLRL--NRSEEAFQELNKKS 380
           A+    YD  +G  R  +I   M E L +L G  T      + +  NR  +    L +  
Sbjct: 295 AIGTKRYDAQSGAER--EIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPG 352

Query: 381 SALKKILRRIPDEITDRKTF 440
              +KIL   PDE T RK F
Sbjct: 353 RIDRKILFENPDEATKRKIF 372


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 351 EAFQELNKKSSALKKILRRIPDEITD 428
           EAFQ++  KS   +K+L  + DE+ D
Sbjct: 353 EAFQKMKLKSVFAEKMLLELKDELHD 378


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 420  FHQEYGVIFSSEHWTSXXXXXXXXXXXXISNQHILLLSGFLANVASSH 277
            +  EY ++  SEH               + N+H ++LS  +AN+   H
Sbjct: 876  YGNEYDILLKSEHELDSSLEEMRNRHKSL-NEHFIMLSDSMANLQVEH 922


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 303 TLTEAECADLRLNRSEEAFQEL 368
           TLT   CAD+ L R EEA   L
Sbjct: 198 TLTGMACADICLLRPEEALSSL 219


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 421 ISSGIRRNIFFRALDFLFSSWN 356
           IS G+R+++F+      +++WN
Sbjct: 24  ISKGLRKDVFYWTKAIAYTTWN 45


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 336 LNRSEEAFQELNKKSSALKKILRRIPDEITDRKTFLETIK 455
           L  S +  ++L K      + LRRI DEIT  K ++   K
Sbjct: 455 LKNSFDGSRDLQKSLIEHVRTLRRIEDEITLTKMWISIAK 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,396
Number of Sequences: 5004
Number of extensions: 22353
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)