Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F07
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 1.8
11_01_0090 + 679162-679472,679579-679588 28 3.1
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 28 3.1
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 4.1
06_03_1237 + 28602250-28604196 27 5.4
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 27 5.4
09_04_0572 - 18632485-18632975,18633330-18633646,18633885-18634435 27 9.5
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 27 9.5
07_03_1225 + 24996082-24996774 27 9.5
06_03_1386 + 29816744-29816941,29817030-29817330,29817421-298175... 27 9.5
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 222 NYDLVAGIMRRADIPVNMNESLLRLQGTLTEAECADLRLNRSEEAFQELNKKSSALKKIL 401
N DL+ I + + E+L RL+G T E + L + A KSSA + +
Sbjct: 1820 NDDLIKKIEESSKTITQLQETLQRLEGKSTNLEAENQVLRQQATATPPSTAKSSASRSKI 1879
Query: 402 RRI 410
RI
Sbjct: 1880 TRI 1882
>11_01_0090 + 679162-679472,679579-679588
Length = 106
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 171 QTLRAALTKAETAVPGLNYDLVAGIMRRADIPV 269
QT A L + +A+ GL DLVAGI + D+ +
Sbjct: 60 QTTCACLKQQTSAMGGLRPDLVAGIPSKCDVNI 92
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +3
Query: 210 VPGLNYDLVAGIMRRADIPVNMNESLLRLQGTLTEAECAD-----LRLNRSEEAFQELNK 374
+PGL + V M RA V+ LRL G + E D LR + +EEA +E
Sbjct: 56 MPGLRHPSVLSAMTRAVADVSSARDALRLLGPRPDHELVDSARAFLRSHAAEEAEEEEED 115
Query: 375 KSSALKKILRRIPD 416
+ A + + R+ +
Sbjct: 116 EKVAKSREVVRLDE 129
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 352 SSDLFNLKSAHSASVRVPCKRSKLSFILTGMSARL 248
SSD+ L S S++VP R L L G S RL
Sbjct: 2589 SSDVTLLSSGDDRSIKVPASRDLLDSHLKGRSVRL 2623
>06_03_1237 + 28602250-28604196
Length = 648
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -1
Query: 373 LFSSWNASSDLFNLKSAHSASVRVPCKRSKLSFILTGMSARL 248
L + ++S L +L+ H+ +VR+P + L F+L+ + RL
Sbjct: 36 LLEAVSSSPSLPHLRHLHALAVRLPLPATSLPFLLSRLLRRL 77
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 144 LEKYDLGASQTLRAALTKAETAVPG-LNYDLVAGIMR 251
L+KYD+G +T++ + + +T G +NY +MR
Sbjct: 468 LKKYDMGDDKTIKEIIAEVDTDHDGRINYQEFVAMMR 504
>09_04_0572 - 18632485-18632975,18633330-18633646,18633885-18634435
Length = 452
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 457 SLIVSRKVFLSVISSGIRRNIFFRALDFLFSSW-NASSDLFNLK 329
S + VFL+ G+ RN+ F+ +D + W N S L++ +
Sbjct: 343 SSVSENGVFLAGSKHGLLRNLKFKNVDLTYKRWTNYSGGLYDYR 386
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 131 GRIRTGKTKEVTGSSSPIVIVLKSYMKIYEKEQYN 27
GR+ G + ++SP+ IV+ S++ Y+ EQ N
Sbjct: 259 GRVVGGGVAGLLVAASPVQIVVGSFLPSYQMEQKN 293
>07_03_1225 + 24996082-24996774
Length = 230
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 162 GASQTLRAALTKAETAVPGLNYDLVAGIMR 251
GA+ + ++L TAVPGL+Y V ++R
Sbjct: 25 GAAAAMVSSLQALSTAVPGLSYIHVGPVLR 54
>06_03_1386 +
29816744-29816941,29817030-29817330,29817421-29817579,
29818916-29819211,29819534-29819761
Length = 393
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 168 SQTLRAALTKAETAVPGLNYDLVAGI 245
S+ LR L K E P +NYD +AG+
Sbjct: 259 SKILRVVL-KGENVEPNINYDYIAGL 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,556,455
Number of Sequences: 37544
Number of extensions: 122928
Number of successful extensions: 296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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