Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F07
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1660| Best HMM Match : DUF1241 (HMM E-Value=0.35)                   50   1e-06
SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)                  32   0.26 
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_20162| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_41996| Best HMM Match : Tropomyosin (HMM E-Value=0.26)              27   5.6  
SB_12386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               27   7.4  
SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_1660| Best HMM Match : DUF1241 (HMM E-Value=0.35)
          Length = 142

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +3

Query: 135 LTQLEK-YDLGASQTLRAALTKAETAVPGLNYDLVAGIMRRADIPVNMNESLLRLQGTLT 311
           L +L K YD    + ++ A  +AE   PG+  +LV+GIM++    +NMN++LL   G  T
Sbjct: 24  LDELSKEYDEDTVKKIQKAFHQAEKENPGITQELVSGIMKKESDGINMNKALLSCAGYNT 83

Query: 312 EAECADLRLNRSEEAFQELNKKSSAL 389
           +    +   NR E  F  L KK+ A+
Sbjct: 84  D----EYNTNREEHEFVNLTKKARAV 105


>SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)
          Length = 1231

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 273  MNESLLRLQGTLTEAECADLRLNRSEEAFQELNKKSSALKKI 398
            M +  LRLQ    EAE  +    + EEA Q+L +K  A KK+
Sbjct: 1159 MRQKQLRLQREREEAEHQEAERKKEEEAKQKLKQKEDARKKL 1200


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 249  RRADIPVNMNESLLRLQGTLTEAECADLRLNRSEEAFQELN 371
            RR  IP+ + E   +L+ T    + A   L +S+E F+EL+
Sbjct: 2364 RRYSIPLRLKEKCKKLEETANALKRAQESLKQSKEEFRELH 2404


>SB_20162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 300 GTLTEAECADLRLNRSEEAFQELNKKSSALKK 395
           G   E   +  ++ RSE+A Q+LNK  S+LK+
Sbjct: 67  GLKDEKRHSSQQITRSEQAIQQLNKDMSSLKQ 98


>SB_41996| Best HMM Match : Tropomyosin (HMM E-Value=0.26)
          Length = 363

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 303 TLTEAECADLR--LNRSEEAFQELNKKSSALKKILRRIP 413
           T  E E A L+  L++ E+AF   + +SSA+ +++R  P
Sbjct: 227 TRVEKESASLKKKLSKLEQAFNSPSPRSSAITRLMRESP 265


>SB_12386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 273 MNESLLRLQGTLTEAECADLRLNRSEEAFQELNKKS--SALKKILRRIPDEITDRKTF 440
           +N  L++LQ  L   EC    L   E+AF   N +     + KI RR  DE  +R ++
Sbjct: 234 INPRLVKLQHKLRAKECELEMLEGQEQAFLGSNTRCELDTIAKITRRKLDEEFERFSY 291


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +3

Query: 177 LRAALTKAETAVPGLNYDLVA---GIMRRADIPVNMNESLLRLQGTLTEAECADLRLNRS 347
           ++  L++ ET++  L  +L A        A   + + ESL   QG L   E     L+  
Sbjct: 105 IQGLLSEKETSILALRGELEAEKANAEALATETIKLKESLDEAQGLLLGKEALIADLSEV 164

Query: 348 EEAFQELNKKSSALKKILRRIPDEITD 428
           +    E+N+   ALK+  R+I  ++T+
Sbjct: 165 QTRQAEVNQLKDALKE-KRKIEKDLTE 190


>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1061

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 306 LTEAECADLRLNRSEEAFQELNKKSSALKKILRRIPDE 419
           L++A+    R  + +E  QEL +K  A K+ LRR  +E
Sbjct: 716 LSQAQYHVSRARKLDEQEQELRRKQEAEKEALRRSKEE 753


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,314,867
Number of Sequences: 59808
Number of extensions: 152331
Number of successful extensions: 419
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)