Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F06
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    29   0.41 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     26   2.9  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   5.1  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   5.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   5.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   5.1  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    25   8.9  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    25   8.9  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -3

Query: 238 CNACLVCFEGDAPDSLPSPVRFTPVDFISCNHLTCVA 128
           CN C  C E D    L +   FT  D  S NHLTC+A
Sbjct: 180 CNLCYECIESD---ELRANCPFT--DCNSINHLTCLA 211


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 391 HILRFHSAKLSFMYFLVIQFIYFSLNHIFL 302
           H++ FH    SF+ F ++ FI F    +FL
Sbjct: 175 HLISFHFLFFSFLSFPLLSFILFPCFSLFL 204


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 172 TPVD-FISCNHLTCVAGP*PFSLRAAIRNMMAGFVEESTWAALNEDCGTTHVFALPL 5
           TP+  F+S NHLT + G   F  R    +    +++ +      E    +   A+PL
Sbjct: 10  TPIQTFVSSNHLTMLYGLKRFGCRLYHHSKSTRYIDATAKVVSQEPAAISSTGAIPL 66


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 118 PFSLRAAIRNMMAGFVEESTWAALNEDCGTTHVFALPLV 2
           P +   A+RN   G + ++TW   ++    T V  + LV
Sbjct: 557 PAAFAKAVRNHKRGLIMDTTWRDAHQSLLATRVRTIDLV 595


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 383 QYMKFSNNIYLYISNVYIAVDSIDF 457
           QY + S   + YI++ YI   S+DF
Sbjct: 135 QYFQLSAGCFRYINDFYIYTKSLDF 159


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 81  PASWRSPRGRHSTRTAGRRT 22
           P+  R+P G HS+ TA R T
Sbjct: 131 PSKIRAPAGNHSSTTANRTT 150


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 126 PATQVRWLQDIKSTGVKRTGEGRL 197
           PA   RW Q I   GVKR G  RL
Sbjct: 883 PADYDRWCQYIFYRGVKRIGYARL 906


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 210 PSKQTKQALH*ESLV*FYNKNKVVVILCKRIKNIW 314
           P++ T++     S V FY K    + LC+ ++ +W
Sbjct: 302 PTELTEEEKQLRSKVLFYLKQDSFIQLCQSLERVW 336


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 152 RYKIDWGETYR*G*TIRSVTLKANQTSIALRIISVVL**KQSSRHIM 292
           ++ I W E    G  +RS  + A + S++ R+ SV+     SSR IM
Sbjct: 307 QFGITWHEKLHPGTFVRSQKIPAIKASLSQRVSSVMTELGVSSRLIM 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,294
Number of Sequences: 5004
Number of extensions: 36884
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)