Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F06
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917...    31   0.73 
01_01_1015 + 8029884-8030676,8030755-8030771                           29   2.2  
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174...    28   3.9  
02_05_0277 - 27390783-27391153,27391229-27391507,27391580-273919...    28   5.1  

>01_05_0749 +
           24890944-24891146,24891414-24891535,24891633-24891721,
           24891813-24891848,24892268-24892367,24892524-24892566,
           24892645-24892739,24892978-24893036,24893114-24893613,
           24893691-24893772,24893864-24894429,24894520-24894655,
           24894750-24894812,24894942-24895172,24895282-24895395
          Length = 812

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -1

Query: 219 ALRVTLRIVYPHLYVSPQSILYLATT*PAWRAHSPSRCEPLYGI*WPASWRSP 61
           ++RV L +V P     P+S  YLA+  P W  +     + LY I   AS  SP
Sbjct: 207 SVRVQLSLVPPEKDHDPESSKYLASVKPCWSLNEKVLIQSLYKIIVSASEISP 259


>01_01_1015 + 8029884-8030676,8030755-8030771
          Length = 269

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 247 DS*CNACLVCFEGDAP--DSLPSPV---RFTPVDFISCNHLTCVAGP 122
           D+ C+ CL  F GDAP  D   +P+       V+ ++  HL C+  P
Sbjct: 55  DAFCSVCLDVFPGDAPFQDDFYNPIVSCSCCGVEPVAAAHLACLTDP 101


>09_01_0112 +
           1737438-1737777,1738441-1738511,1738974-1739052,
           1741559-1741641,1741733-1741784,1742038-1742105,
           1742279-1742345,1742426-1742505,1742576-1742640,
           1742785-1742847,1743271-1743427,1743511-1743588,
           1743677-1744219,1744321-1744497,1744534-1744788,
           1745270-1745329,1745874-1745888,1746123-1746135,
           1746819-1746934
          Length = 793

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 123 GPATQVRWLQDIKSTGVKRTGEGRLSGASPSKQ 221
           GPA Q+  LQ  +S G    G+ RLSG  P  Q
Sbjct: 447 GPAQQIGQLQVPQSMGPGSFGQNRLSGQLPVSQ 479


>02_05_0277 -
           27390783-27391153,27391229-27391507,27391580-27391970,
           27392042-27392199,27392755-27392975,27393059-27393286,
           27394231-27394268,27394616-27394693
          Length = 587

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 42  SLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIKSTGVKRTGE 188
           SL A H+D  T  ++      RN+ G    + + + +  K+T +K TGE
Sbjct: 306 SLEALHMDVDTNESMCTSTCKRNDLGGPHRSVLEFTRTNKNTELKLTGE 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,575,233
Number of Sequences: 37544
Number of extensions: 244021
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)