Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F06
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)             77   9e-15
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               52   3e-07
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             29   2.3  
SB_12383| Best HMM Match : EGF_CA (HMM E-Value=2.5e-12)                29   3.0  
SB_47560| Best HMM Match : CM_2 (HMM E-Value=0.82)                     27   6.9  
SB_35443| Best HMM Match : Condensation (HMM E-Value=0.006)            27   6.9  
SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)                 27   9.2  
SB_32670| Best HMM Match : CIMR (HMM E-Value=0)                        27   9.2  

>SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)
          Length = 186

 Score = 77.0 bits (181), Expect = 9e-15
 Identities = 34/49 (69%), Positives = 40/49 (81%)
 Frame = +3

Query: 9   GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQD 155
           G   TC V  ++L +AH+D STK AIIFRIAA+N+KGYGPATQVRWLQD
Sbjct: 61  GAQPTCTVSLATLQSAHIDYSTKAAIIFRIAAKNDKGYGPATQVRWLQD 109


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +3

Query: 9    GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGY 122
            G   TC V  ++L +AH+D STK AIIFRIAA+N+KGY
Sbjct: 1114 GAQPTCTVSLATLQSAHIDYSTKAAIIFRIAAKNDKGY 1151


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 93  RIAARNEKGYGPATQVRWLQDIKSTGVKRTGEGRLSGASPSKQTK 227
           R++ARN  GYGP ++V     +K TG   T + +LS  +  +  K
Sbjct: 742 RVSARNSMGYGPPSKV---VSVKYTGKTPTDDIKLSSLNLKQGAK 783


>SB_12383| Best HMM Match : EGF_CA (HMM E-Value=2.5e-12)
          Length = 228

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +3

Query: 114 KGYGPATQVRWLQDIKSTGVKRTGEGRLSGASPSKQTKQA 233
           +G GP T VR      STGVKR  +  L GAS  ++T  A
Sbjct: 183 QGRGPKTSVR------STGVKRFAQAVLQGASDLRKTSGA 216


>SB_47560| Best HMM Match : CM_2 (HMM E-Value=0.82)
          Length = 384

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 181 QVRVDYPERHPQSKPN 228
           +++  YP+R PQSKPN
Sbjct: 284 ELKCSYPQRFPQSKPN 299


>SB_35443| Best HMM Match : Condensation (HMM E-Value=0.006)
          Length = 558

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 395 FSNNIYLYISNV-YIAVDSIDFLKK**CAFNIHVS 496
           F+NN+    +NV Y+ +DS++  KK  C F I+ S
Sbjct: 468 FTNNLVSVNANVEYLRIDSLEISKKIDCQFLIYSS 502


>SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)
          Length = 1239

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -3

Query: 220 CFEGDAPDSLPSP--VRFTPVDFISCNHLTC--VAGP*PFSLRAAIRNMMAGFVEESTWA 53
           C EGD+PD+ P P   RF P +  +    T   V G  P S    I +++    E+  WA
Sbjct: 306 CVEGDSPDTPPKPSASRFDPDELNTHFASTAERVTGATPTSAN-NISDLIQSLPEDPVWA 364


>SB_32670| Best HMM Match : CIMR (HMM E-Value=0)
          Length = 1441

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 72   WRSPRGRHSTRTAGRRTCSL 13
            W++P   H TRTAG   CS+
Sbjct: 1195 WKTPSACHLTRTAGPGDCSV 1214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,649
Number of Sequences: 59808
Number of extensions: 283021
Number of successful extensions: 778
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)