Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F06
         (516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X79198-1|CAA55790.1| 1938|Homo sapiens host cell factor protein.       85   1e-16
BC033799-1|AAH33799.1|  792|Homo sapiens host cell factor C2 pro...    72   1e-12
AK223342-1|BAD97062.1|  792|Homo sapiens host cell factor C2 var...    72   1e-12
AF117210-1|AAD27814.1|  792|Homo sapiens host cell factor 2 prot...    72   1e-12
AY751909-1|AAV32415.1|   47|Homo sapiens T cell receptor beta pr...    29   9.7  
AF134825-2|AAD54488.1|  234|Homo sapiens small nuclear ribonucle...    29   9.7  
AF134825-1|AAD54489.1|  243|Homo sapiens small nuclear ribonucle...    29   9.7  

>X79198-1|CAA55790.1| 1938|Homo sapiens host cell factor protein.
          Length = 1938

 Score = 85.0 bits (201), Expect = 1e-16
 Identities = 42/77 (54%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
 Frame = +3

Query: 9    GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIK--STGVKRT 182
            G + +C+V  SSLS AH+D +TKPAIIFRIAARNEKGYGPATQVRWLQ+    S+G K  
Sbjct: 1857 GPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSSGTKPA 1916

Query: 183  GEGRLSGASPSKQTKQA 233
             +  +S        K++
Sbjct: 1917 NKRPMSSPEMKSAPKKS 1933


>BC033799-1|AAH33799.1|  792|Homo sapiens host cell factor C2
           protein.
          Length = 792

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 29/48 (60%), Positives = 39/48 (81%)
 Frame = +3

Query: 9   GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQ 152
           G   +C+V    L+ AH+D +++PAI+FRI+A+NEKGYGPATQVRWLQ
Sbjct: 736 GLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQ 783


>AK223342-1|BAD97062.1|  792|Homo sapiens host cell factor C2
           variant protein.
          Length = 792

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 29/48 (60%), Positives = 39/48 (81%)
 Frame = +3

Query: 9   GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQ 152
           G   +C+V    L+ AH+D +++PAI+FRI+A+NEKGYGPATQVRWLQ
Sbjct: 736 GLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQ 783


>AF117210-1|AAD27814.1|  792|Homo sapiens host cell factor 2
           protein.
          Length = 792

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 29/48 (60%), Positives = 39/48 (81%)
 Frame = +3

Query: 9   GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQ 152
           G   +C+V    L+ AH+D +++PAI+FRI+A+NEKGYGPATQVRWLQ
Sbjct: 736 GLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQ 783


>AY751909-1|AAV32415.1|   47|Homo sapiens T cell receptor beta
           protein.
          Length = 47

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 30  VPQSSLSAAHVDSSTK--PAIIFRIAARNEKGYGPATQVRWLQDIKS 164
           +P +S S   +  S     A+ F  ++ NE+ +GP T++  L+D+K+
Sbjct: 1   MPNASFSTLKIQPSEPRDSAVYFCASSSNEQFFGPGTRLTVLEDLKN 47


>AF134825-2|AAD54488.1|  234|Homo sapiens small nuclear
           ribonucleoprotein B protein.
          Length = 234

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 138 PAWRAHSPSRCEPLYGI*WPASWRS-PRGRHSTRTAGRRTCSLYPSC 1
           P+W +H+P  C   +   W   WR+ P G   TR   +R C    SC
Sbjct: 118 PSWGSHAPGSCRTCWASPW--GWRAIPTGDDPTR---KRYCCSRCSC 159


>AF134825-1|AAD54489.1|  243|Homo sapiens small nuclear
           ribonucleoprotein B' protein.
          Length = 243

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 138 PAWRAHSPSRCEPLYGI*WPASWRS-PRGRHSTRTAGRRTCSLYPSC 1
           P+W +H+P  C   +   W   WR+ P G   TR   +R C    SC
Sbjct: 118 PSWGSHAPGSCRTCWASPW--GWRAIPTGDDPTR---KRYCCSRCSC 159


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,193,242
Number of Sequences: 237096
Number of extensions: 1338878
Number of successful extensions: 2807
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2807
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)