Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F06
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 rela...    77   8e-15
AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell fac...    77   8e-15
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    29   2.6  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       29   2.6  
U55374-4|AAB36866.2|  589|Caenorhabditis elegans Immunoglobulin-...    27   8.0  
U55374-3|ABS19462.1|  591|Caenorhabditis elegans Immunoglobulin-...    27   8.0  

>U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 related
           protein 1 protein.
          Length = 782

 Score = 77.0 bits (181), Expect = 8e-15
 Identities = 37/56 (66%), Positives = 41/56 (73%)
 Frame = +3

Query: 9   GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIKSTGVK 176
           G    C V QS+L  A VD + KPAIIFRIAARNEKGYGPATQVRWLQD +   V+
Sbjct: 701 GPQADCQVLQSNLGTAFVDQTNKPAIIFRIAARNEKGYGPATQVRWLQDQQKIPVR 756


>AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell factor
           1 protein.
          Length = 782

 Score = 77.0 bits (181), Expect = 8e-15
 Identities = 37/56 (66%), Positives = 41/56 (73%)
 Frame = +3

Query: 9   GKANTCVVPQSSLSAAHVDSSTKPAIIFRIAARNEKGYGPATQVRWLQDIKSTGVK 176
           G    C V QS+L  A VD + KPAIIFRIAARNEKGYGPATQVRWLQD +   V+
Sbjct: 701 GPQADCQVLQSNLGTAFVDQTNKPAIIFRIAARNEKGYGPATQVRWLQDQQKIPVR 756


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 75   KPAIIFRIAARNEKGYGPATQV 140
            K    F+I ARNEKG+GP + V
Sbjct: 1016 KANYFFKIQARNEKGHGPFSSV 1037


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 75   KPAIIFRIAARNEKGYGPATQV 140
            K    F+I ARNEKG+GP + V
Sbjct: 1016 KANYFFKIQARNEKGHGPFSSV 1037


>U55374-4|AAB36866.2|  589|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform a protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 126 PATQVRWLQD--IKSTGVKRTGEGRLSGASPSKQTKQALH*ES 248
           PATQ RWL++     TG + T    + G S   Q    LH ES
Sbjct: 196 PATQYRWLKNGSPSGTGAEITIGTEMIGQSIQCQANNGLHDES 238


>U55374-3|ABS19462.1|  591|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform b protein.
          Length = 591

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 126 PATQVRWLQD--IKSTGVKRTGEGRLSGASPSKQTKQALH*ES 248
           PATQ RWL++     TG + T    + G S   Q    LH ES
Sbjct: 196 PATQYRWLKNGSPSGTGAEITIGTEMIGQSIQCQANNGLHDES 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,875
Number of Sequences: 27780
Number of extensions: 207804
Number of successful extensions: 511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)