Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F05
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 143 2e-35
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 143 2e-35
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 143 2e-35
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 40 2e-04
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 34 0.011
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 31 0.098
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 31 0.098
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 0.69
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 1.6
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 26 2.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 3.7
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 4.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 4.9
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 4.9
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 25 4.9
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 4.9
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 25 6.5
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.5
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 8.5
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 8.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 143 bits (346), Expect = 2e-35
Identities = 67/100 (67%), Positives = 79/100 (79%)
Frame = +3
Query: 24 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHESC*LLRRPP 203
TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V DS+ P +
Sbjct: 284 TTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ-- 341
Query: 204 LIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 323
+I+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+
Sbjct: 342 VIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRS 381
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +2
Query: 338 EDNPKSIKSGDAAIVNLVPSNP-CVWSLPEFPP-SSFRVRDM 457
E++PK +KSGDA I +VPS P CV + ++ P F VRDM
Sbjct: 386 EESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 143 bits (346), Expect = 2e-35
Identities = 67/100 (67%), Positives = 79/100 (79%)
Frame = +3
Query: 24 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHESC*LLRRPP 203
TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V DS+ P +
Sbjct: 284 TTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ-- 341
Query: 204 LIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 323
+I+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+
Sbjct: 342 VIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRS 381
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +2
Query: 338 EDNPKSIKSGDAAIVNLVPSNP-CVWSLPEFPP-SSFRVRDM 457
E++PK +KSGDA I +VPS P CV + ++ P F VRDM
Sbjct: 386 EESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 143 bits (346), Expect = 2e-35
Identities = 67/100 (67%), Positives = 79/100 (79%)
Frame = +3
Query: 24 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHESC*LLRRPP 203
TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V DS+ P +
Sbjct: 284 TTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ-- 341
Query: 204 LIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 323
+I+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+
Sbjct: 342 VIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRS 381
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +2
Query: 338 EDNPKSIKSGDAAIVNLVPSNP-CVWSLPEFPP-SSFRVRDM 457
E++PK +KSGDA I +VPS P CV + ++ P F VRDM
Sbjct: 386 EESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 40.3 bits (90), Expect = 2e-04
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +3
Query: 24 TTEVKSV-EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHESC*LLRRP 200
T EV ++ + E + ++ GD V V+ +++ GYV S K P H + + +
Sbjct: 507 TLEVTAIYDEADEEISSSICGDQVRLRVRGDD-SDVQTGYVLT-STKNPVHATTRFIAQ- 563
Query: 201 PLIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDR 317
+ +L P ++ GY+ V+ HTA FA++ K+D+
Sbjct: 564 -IAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK 601
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 34.3 bits (75), Expect = 0.011
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 27 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHE 176
T V +EM + L AV GDN G ++++ ++L+RG + H+
Sbjct: 296 TTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMIVAQPGTVAPHQ 345
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 31.1 bits (67), Expect = 0.098
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 290 CRNQRESRPSYCVNQPEDNPKSIKSGDAAIVNLVPSNPCV 409
C N + P+Y QP NP ++ +V+ +P +PC+
Sbjct: 261 CENFPTTVPNYPFQQPSYNPNALVPSYTTLVSQLPPSPCL 300
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 31.1 bits (67), Expect = 0.098
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 167 HPRELLTTSTTAIDCAKS-PRSNIKRIHTCIGLPHSPHSLQICRNQ-RESRPSYCVNQ-P 337
+P E++ T ++ID S R I + GLPH+ + QICR RP+ V+
Sbjct: 142 YPEEMIQTGISSIDGLNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPTKDVHDGH 201
Query: 338 EDN 346
EDN
Sbjct: 202 EDN 204
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 28.3 bits (60), Expect = 0.69
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 105 KNVSVKELRRGYVARDSEKQPTHES----C*LLRRPPLIVLNHPGQISNGYTPVLDCHTA 272
K +K L GY A+ S+KQP S +R L P Q+S T +D TA
Sbjct: 1264 KREDLKVLALGYFAKLSKKQPEWVSFNSFSGTVRPSNSEKLQRPQQLSVAATSAVDSKTA 1323
Query: 273 HIACKFAEIKEKVDRRTV*IN 335
I +E + K+D++ V +N
Sbjct: 1324 SI----SEEQAKIDKQKVALN 1340
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 348 LNPLNLVMPPLSTWFPPTPVCGVFQNSHPRRFA 446
LNPL + PL+ P PV G N+HP R +
Sbjct: 603 LNPLPSYLTPLAK--KPLPVSGHTNNAHPLRLS 633
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 2.8
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 213 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTV*INQRTTLNPLN 362
L HP Q+SN +T C A AC+ + E + T N TTL LN
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQCGDNCECLGCLTH-PNNATTLAALN 353
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 3.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 79 PVTMLVSTSKTYLSRNCAVVTLHEILKNNPPTRAADYFDDRH*LC--*ITQVKYQTDTH 249
P +LV SKTY + ++ L L+NNP + D H C ++ + Y D H
Sbjct: 2481 PPHLLVYLSKTYGLHHYCILLLENSLQNNPGL-SEDELTVYHKSCLDALSDIYYSLDEH 2538
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 320 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 219
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 118 SRNCAVVTLHEILKNNPPTRAADYFDD 198
S+N ++T+ +++K+ P T + YF+D
Sbjct: 987 SKNNLLITILDLMKSEPSTFVSLYFND 1013
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 4.9
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 30 EVKSVEMHHEALQEAVPGD---NVGFNVK-NVSVKELRRGYVARDSEKQPTHE 176
E S E+H E ++A GD N G + + +S E R + R EKQP E
Sbjct: 216 EKSSSELHEEESEQAAEGDTAKNSGTDAQAPLSDDEWLRLHRTRIKEKQPEEE 268
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 104 DVETNIVTGYSFL*SLVVHFHGLDFSSALVP 12
DV N VTG F S+ + H LD S +++P
Sbjct: 57 DVTLNKVTGVDFANSIFEYVHSLD-SDSVIP 86
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 221 PRSNIKRI-HTCIGLPHSPHSLQICRNQRESRPSYCVN 331
P +IKR+ +T +G+P I ++ +S+P YC N
Sbjct: 512 PYGSIKRVCNTMLGVPSQ---CAISKHILQSKPQYCAN 546
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 486 SSFIHDATLLMSRTRNDEGGNSGRLH 409
S H L M RT+N+ G N G H
Sbjct: 134 SPLSHSTPLSMFRTKNEYGSNKGFSH 159
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 6.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 308 SRPSYCV-NQPEDNPKSIKSGDAAIVNLVPSNPCVWSLPEFPPSSFRVRDMSNV 466
S+PSY +QP P G ++ + S P V + + PP R MS +
Sbjct: 98 SQPSYSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQM 151
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 224 RSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 316
+S + I CIG+ SPH +C R Q +P
Sbjct: 106 KSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 8.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 301 LISANLQAMWAVWQSNTGV 245
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,555
Number of Sequences: 5004
Number of extensions: 52245
Number of successful extensions: 164
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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