Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F05
(503 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 138 3e-33
SB_7486| Best HMM Match : Frizzled (HMM E-Value=0) 30 1.2
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013) 29 2.2
SB_9151| Best HMM Match : WAP (HMM E-Value=0.045) 28 3.8
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10) 28 5.0
SB_34244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09) 27 6.6
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04) 27 6.6
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 8.8
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 138 bits (333), Expect = 3e-33
Identities = 65/100 (65%), Positives = 80/100 (80%)
Frame = +3
Query: 24 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHESC*LLRRPP 203
TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG VA D + P + C
Sbjct: 145 TTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPP-KPCKSF-TAQ 202
Query: 204 LIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 323
+IV+NHPG+I GY+PVLDCHTAHIACKF ++ EK+DRR+
Sbjct: 203 VIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRS 242
Score = 54.0 bits (124), Expect = 7e-08
Identities = 26/47 (55%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +2
Query: 338 EDNPKSIKSGDAAIVNLVPSNP-CVWSLPEFPP-SSFRVRDMSNVAS 472
EDNPK IK+GDAA+V ++PS P CV + EFPP F VRDM +
Sbjct: 247 EDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVA 293
>SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 535
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = +2
Query: 131 PW---LRCTRF*KTTHPRELLTTSTTAIDCAKSPRSNIKRIHTCIGLPHSPHSLQICRNQ 301
PW L CTRF + R + + + PR + K I+ P S S Q CR
Sbjct: 123 PWPNPLNCTRFLVRNNERNMCMPGPNFTESPEKPRPDFKPINDTTEKPPSTGSEQ-CRRF 181
Query: 302 RESRPSYCVNQPE 340
+ S+ + V E
Sbjct: 182 KNSKNYFYVQSTE 194
>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
Length = 872
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 218 SPRSNIKRIHTCIGLPHSPHSLQICRNQRESRPSYCVNQPEDNPK 352
SP+ KR T GLP S HSL CR S + + N K
Sbjct: 537 SPKMKKKRPKTGEGLPGSKHSLDSCRPHYRRSKSMVLGKDARNVK 581
>SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)
Length = 1865
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +2
Query: 314 PSYCVNQPEDNPKSIKSGDAAIVNLVPSNPCVWSLPEFPPSSFRVRD 454
P YC+ + E A +P NPC W P SS+ RD
Sbjct: 141 PGYCIIEHEGQRTCF-----ATKQFLPGNPCQWCDPSVSTSSWTSRD 182
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 30 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHES 179
E +V++ +AL+E+V D+V + + + YV DSE Q TH++
Sbjct: 925 EYGNVDVLGQALRESVQTDDV-MRTFELIINRVNVKYVPTDSEDQRTHDT 973
>SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)
Length = 507
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -1
Query: 185 SAALVGGLFFRISCNVTTAQFLDRYVFDVETNIVTGYS 72
SA + G LFF I C+V +FL YV V VTG S
Sbjct: 154 SAIISGNLFFLILCSV--YRFLPSYVIVVLLCFVTGAS 189
>SB_34244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/66 (24%), Positives = 25/66 (37%)
Frame = +2
Query: 179 LLTTSTTAIDCAKSPRSNIKRIHTCIGLPHSPHSLQICRNQRESRPSYCVNQPEDNPKSI 358
L T I R ++ I + G PH P + + + + QPE +
Sbjct: 44 LTTKEQRIITTLLQEREGMEEIGSTKGRPHVPQTKGVAEDNVTPHGTLATKQPEIKGEDC 103
Query: 359 KSGDAA 376
K+GD A
Sbjct: 104 KAGDPA 109
>SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
Length = 688
Score = 27.5 bits (58), Expect = 6.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 50 APRGSTRSCTR*QCWFQRQKRICQGIAPWLRCTRF*KTTHPRELLTTSTTAIDCAKSP 223
APR S + T C + R+C+ + P T F PR L T +T+ C ++P
Sbjct: 599 APR-SLYASTSFPCMQASRSRVCKHLVPLYTSTSFPCMQAPRSLYT--STSFPCIQAP 653
>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 27.5 bits (58), Expect = 6.6
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +2
Query: 269 SPHSLQICRNQRESRPSYCVNQPEDNPKSIKSGDAAIVNLVPSNPCVWSLPEFPP 433
SPHS + N+R S P +PK I S DAA L P +P LP+ PP
Sbjct: 314 SPHSDRKRSNRRHSGSRSRSMSP--SPKKI-SNDAAESLLEPISPSSVPLPDDPP 365
>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
Length = 1481
Score = 27.5 bits (58), Expect = 6.6
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 176 ELLTTSTTAIDCAKSPRSNIKRIHTCIGLPHSPHSLQICRNQRESRPS-YCVNQPED-NP 349
ELLT T I K + I +C+GL H LQ R + S S Y N E +
Sbjct: 988 ELLTLMNTVIALQKELLCIVDSILSCLGL--DSHQLQGTRLRFVSSDSGYTSNLTETCSE 1045
Query: 350 KSIKSGDAAIVNLVPSN 400
+S +S DA I +V S+
Sbjct: 1046 RSSESSDANINPIVTSS 1062
>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +2
Query: 212 AKSPRSNIKRI-HTCIGLPHSPHSLQICRNQRESRPSYCVNQPEDNPKSIKSGDAAIVN 385
+K PRS R+ TC P L + E P P+ NP+ G+ N
Sbjct: 125 SKDPRSREPRVPSTCFRRPPEHRELLLYLRGHEGGPRRLPEAPQTNPEDSSPGNRKAAN 183
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 392 PSNPCVWSLPEFPPSSFRVRDMSNVASCIK 481
P +PC +L FP + RV+D + V C K
Sbjct: 252 PLDPCEITLCAFPRTKCRVKDNTAVCECPK 281
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 188 TSTTAIDCAKSPRSNIKRIHTCIGLPHSPHSLQICRNQRESRPSYCVNQPEDNPKSIKS 364
T + C+ S S+ +RI+TC GLP L C + S S DNP+ + S
Sbjct: 816 TKRPPLTCS-SCTSSRRRINTCTGLPIERCFLVYCSIEGRSHLSGNPACASDNPQLVMS 873
>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 45 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQP 167
E +++ +EA+PG G+ +NV ++L Y + K+P
Sbjct: 255 EFNYDLYKEAIPGGRSGWANRNVHQQQLMTMYHKLEDLKRP 295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,682,424
Number of Sequences: 59808
Number of extensions: 437433
Number of successful extensions: 1091
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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