Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F05
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...   159   1e-39
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...   159   1e-39
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...   159   1e-39
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    32   0.27 
AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditi...    31   0.36 
D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation fact...    29   1.4  
D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation fact...    29   1.4  
AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongatio...    29   1.4  
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF067214-4|AAC17001.1|  399|Caenorhabditis elegans Dystroglycan ...    27   5.8  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.       27   7.7  
U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeri...    27   7.7  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying de...    27   7.7  
AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying de...    27   7.7  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score =  159 bits (385), Expect = 1e-39
 Identities = 74/100 (74%), Positives = 84/100 (84%)
 Frame = +3

Query: 24  TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHESC*LLRRPP 203
           TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V  DS++ P  E+        
Sbjct: 252 TTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEA--RTFHAQ 309

Query: 204 LIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 323
           +I++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRT
Sbjct: 310 VIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRT 349



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 338 EDNPKSIKSGDAAIVNLVPSNP-CVWSLPEFPP-SSFRVRDM 457
           ED PK +KSGDA IV L+P+ P CV S  ++ P   F VRDM
Sbjct: 354 EDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 395


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score =  159 bits (385), Expect = 1e-39
 Identities = 74/100 (74%), Positives = 84/100 (84%)
 Frame = +3

Query: 24  TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHESC*LLRRPP 203
           TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V  DS++ P  E+        
Sbjct: 286 TTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEA--RTFHAQ 343

Query: 204 LIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 323
           +I++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRT
Sbjct: 344 VIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRT 383



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 338 EDNPKSIKSGDAAIVNLVPSNP-CVWSLPEFPP-SSFRVRDM 457
           ED PK +KSGDA IV L+P+ P CV S  ++ P   F VRDM
Sbjct: 388 EDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 429


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score =  159 bits (385), Expect = 1e-39
 Identities = 74/100 (74%), Positives = 84/100 (84%)
 Frame = +3

Query: 24  TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHESC*LLRRPP 203
           TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V  DS++ P  E+        
Sbjct: 286 TTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEA--RTFHAQ 343

Query: 204 LIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 323
           +I++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRT
Sbjct: 344 VIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRT 383



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 338 EDNPKSIKSGDAAIVNLVPSNP-CVWSLPEFPP-SSFRVRDM 457
           ED PK +KSGDA IV L+P+ P CV S  ++ P   F VRDM
Sbjct: 388 EDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 429


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 20/86 (23%), Positives = 39/86 (45%)
 Frame = +3

Query: 66  QEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHESC*LLRRPPLIVLNHPGQISNGY 245
           +  V GDN+ F +K +   EL+ G++    +          +    ++VL H   I++GY
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGR---VFDAEVLVLEHRSIIASGY 448

Query: 246 TPVLDCHTAHIACKFAEIKEKVDRRT 323
           + VL   +A        +   +D++T
Sbjct: 449 SCVLHIQSAVEEVTVKGVIATIDKKT 474


>AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditis
           gtp-binding proteinprotein 1 protein.
          Length = 613

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +3

Query: 33  VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVARDSEKQPTHESC*LLRRPPLIV 212
           +KS+      +     G +  F +K +  K++R+G V  D + +P      ++    ++V
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVAS---MVFEAEILV 476

Query: 213 LNHPGQISNGYTPVL 257
           L+HP  I   Y  +L
Sbjct: 477 LHHPTTIKPNYQAML 491


>D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 33  VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 143
           +  +E   + + +A PGD +G  ++ +  K++RRG V
Sbjct: 300 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336


>D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 33  VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 143
           +  +E   + + +A PGD +G  ++ +  K++RRG V
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337


>AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 1 protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 33  VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 143
           +  +E   + + +A PGD +G  ++ +  K++RRG V
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 251  CIGLPHSPHSLQICRNQRESRPSYCVNQPEDNPKSIKS 364
            C G PH  H +Q+C  QR   P Y   +  D+ +  +S
Sbjct: 1053 CGGDPHEHHGVQLCSPQR--LPHYSSTEEHDSYRQFRS 1088


>Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical
           protein F59B2.12 protein.
          Length = 918

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/55 (20%), Positives = 30/55 (54%)
 Frame = -3

Query: 465 TLLMSRTRNDEGGNSGRLHTQGLEGTRLTMAASPDLMDLGLSSG*FTQYDGRLSL 301
           +L+ + + + +  +  ++H++ ++GT LT A   ++    L+ G   Q   +L++
Sbjct: 733 SLVENHSNDSDASSDSKIHSKSVDGTELTDAKHSNVSTSHLTEGQLAQIQKKLAM 787


>AF067214-4|AAC17001.1|  399|Caenorhabditis elegans Dystroglycan
           protein 2 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 166 GCFSESRAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVV 23
           G FS  R T    N+ T    TLKP+L  G+++      + T    VV
Sbjct: 308 GVFSSPRPTTRTSNTTTAAMTTLKPSLKKGSSTTGTILSLGTICAIVV 355


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 197 TAIDCAKSPRSNIKRIHTCIGLPHSPHSLQICRNQRESRPSYC 325
           + ID A S     ++  TCI  P     + IC N+  + P+ C
Sbjct: 291 SVIDIAHSGACRARK-STCITCPKDEKKIPICDNRNMTHPTLC 332


>U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 253 TGV--YPFDI*PG*FSTINGGRRSSQQLSWVGCF 158
           TG+  YPFD+    F  ++ G + S++  W+ CF
Sbjct: 183 TGIIEYPFDLEQIIFRMVDVGGQRSERRKWIHCF 216


>U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical
           protein F37A4.3 protein.
          Length = 229

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 118 TDTFLTLKPTLSPGTASCRASWCISTD 38
           T  FLTL+ T    T  C+ SWC   D
Sbjct: 42  TSLFLTLQSTGPEMTNLCKKSWCDKVD 68


>AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 253 TGV--YPFDI*PG*FSTINGGRRSSQQLSWVGCF 158
           TG+  YPFD+    F  ++ G + S++  W+ CF
Sbjct: 183 TGIIEYPFDLEQIIFRMVDVGGQRSERRKWIHCF 216


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 221 PRSNIKRIHTCIGLPHSPHSLQICRNQRESRPSYCVNQPEDNPKSIKS 364
           P ++  RIH C   P  P+S     ++R   P YC N+PE +  S  S
Sbjct: 182 PGADSPRIHCC--RPCCPYS----HHRRLCDPCYCSNRPESHRDSSSS 223


>AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying
           defective protein 30,isoform b protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 253 TGV--YPFDI*PG*FSTINGGRRSSQQLSWVGCF 158
           TG+  YPFD+    F  ++ G + S++  W+ CF
Sbjct: 131 TGIIEYPFDLEQIIFRMVDVGGQRSERRKWIHCF 164


>AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying
           defective protein 30,isoform a protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 253 TGV--YPFDI*PG*FSTINGGRRSSQQLSWVGCF 158
           TG+  YPFD+    F  ++ G + S++  W+ CF
Sbjct: 183 TGIIEYPFDLEQIIFRMVDVGGQRSERRKWIHCF 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,433,215
Number of Sequences: 27780
Number of extensions: 308005
Number of successful extensions: 993
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)