Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F04
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 120 6e-28
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 89 2e-18
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 85 4e-17
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 52 3e-07
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 52 3e-07
11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935... 37 0.010
01_05_0145 + 18588201-18588242,18588925-18589044,18589201-185894... 35 0.041
01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747,369... 32 0.22
06_03_1330 - 29375494-29376912 29 2.0
03_01_0113 + 905535-905840,906601-906812,906929-907196,907314-90... 29 2.0
12_01_0015 - 111666-111747,112043-112368,112500-112635,112772-11... 28 3.5
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11... 28 3.5
08_01_0298 - 2406254-2406322,2406444-2406541,2408652-2408769,240... 28 3.5
06_02_0065 - 11073816-11074384,11074605-11075160 28 3.5
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 28 4.7
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 27 8.2
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 120 bits (289), Expect = 6e-28
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Frame = +2
Query: 89 GYPAEAHTVLTKDGYILTIHRIPYAK----NAKSKTPPRKTVLLHHGLLGSSADWILAGP 256
GYP E H V T+DGYIL + RIP + R+ VLL HG+L W+L P
Sbjct: 57 GYPCEEHEVTTQDGYILGLQRIPRGRIGGVTGGGAAAARQPVLLQHGVLVDGMTWLLGSP 116
Query: 257 KKALAYILSEAGYDVWFANARGNTYSKAHISKNIDTFAFWNFTFHDISQNDLPAVIDYIM 436
+++L YIL++ G+DVW AN RG +S H+S + + ++WN+++ DI ND+PA++DY+
Sbjct: 117 EESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKSRSYWNWSWDDIVVNDMPAIVDYVC 176
Query: 437 EIKGWDVKINYIGH 478
G K +Y+GH
Sbjct: 177 SHTG--QKPHYVGH 188
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 88.6 bits (210), Expect = 2e-18
Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Frame = +2
Query: 89 GYPAEAHTVLTKDGYILTIHRIPYAKN---AKSKTPPRKTVLLHHGLLGSSADWILAGPK 259
GY E HTV T+DGYIL++ RIP + A + VLL HGL+ W++ P
Sbjct: 63 GYACEEHTVTTEDGYILSLQRIPSGRGETAAGGGGGGKVPVLLQHGLMMDGVTWLMNSPN 122
Query: 260 KALAYILSEAGYDVWFANARGNTYSKAHIS 349
++L YIL++ GYDVW AN+RG YS+ H S
Sbjct: 123 ESLGYILADNGYDVWIANSRGTVYSRHHTS 152
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 84.6 bits (200), Expect = 4e-17
Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +2
Query: 71 QLLALNGYPAEAHTVLTKDGYILTIHRIPYAKN--AKSKTPPRKTVLLHHGLLGSSADWI 244
QLL GYP H V TKDG++L++ IP+ KN A S PP V L HGL W
Sbjct: 49 QLLLPLGYPCTEHNVETKDGFLLSLQHIPHGKNKAADSTGPP---VFLQHGLFQGGDTWF 105
Query: 245 LAGPKKALAYILSEAGYDVWFANARGNTYSKAH 343
+ +++L YIL++ G+DVW N RG +SK H
Sbjct: 106 INSAEQSLGYILADNGFDVWIGNVRGTRWSKGH 138
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 51.6 bits (118), Expect = 3e-07
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 32 KCTDDPANQMTTPQLLALNGYPAEAHTVLTKDGYILTIHRIPYA-KNAKSKTPPRKTVLL 208
+C P A GYP E + V T+DGYIL++ RIP+ ++ + T R VLL
Sbjct: 62 RCAPSPHPLSMCQSRAAAFGYPCEEYKVTTEDGYILSLKRIPHGPHDSNTSTEMRPPVLL 121
Query: 209 HHGLLGSSADW 241
HGL+ + +W
Sbjct: 122 FHGLMVAYWEW 132
Score = 34.3 bits (75), Expect = 0.054
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +2
Query: 368 AFWNFTFHDISQNDLPAVIDYIMEIKGWDVKINYIGH 478
A+W +++ +++ DLPAV+ + + G KI+YIGH
Sbjct: 128 AYWEWSWDELASYDLPAVLQFAYDHTG--EKIHYIGH 162
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 51.6 bits (118), Expect = 3e-07
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +2
Query: 287 AGYDVWFANARGNTYSKAHISKNIDTFAFWNFTFHDISQNDLPAVIDYIMEIK 445
AGYDV+ N RG S+ H+ KNI ++ +W ++ ++ D+PA+++ I +IK
Sbjct: 125 AGYDVFLGNLRG-LVSREHVDKNISSYKYWKYSVNEHGTKDMPAIVEEIHKIK 176
>11_04_0470 -
18092681-18092695,18092725-18092811,18093528-18093593,
18093696-18093740,18093850-18093903,18093987-18094082,
18094161-18094241,18095634-18095714,18095798-18095884,
18095976-18096074,18096644-18096769,18098162-18098248,
18098321-18098389,18098711-18098806,18099053-18099169,
18099710-18099790,18099873-18100010,18100307-18100580,
18100735-18100830,18101612-18101757,18102883-18103141,
18103434-18103537,18103623-18103748,18103872-18103982,
18104200-18104304
Length = 881
Score = 36.7 bits (81), Expect = 0.010
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +2
Query: 245 LAGPKKALAYILSEAGYDVWFANARGNTYSKAHISKNIDTFAFWNFTFHDISQNDLPAVI 424
L G +K AY+ E + W A + + +KA S ++ WN+ F D Q LP
Sbjct: 409 LMGGEKGNAYV--ENNFTCWLAKQKEDLRAKAFCSAPMEFNGEWNWEFEDEFQRYLPVYF 466
Query: 425 DYIMEIKGWD 454
+ + E+ D
Sbjct: 467 NMLQEVDAMD 476
>01_05_0145 +
18588201-18588242,18588925-18589044,18589201-18589457,
18589980-18590048,18590091-18590115
Length = 170
Score = 34.7 bits (76), Expect = 0.041
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 89 GYPAEAHTVLTKDGYILTIHRIP 157
GYP EA V+T DGY+L + RIP
Sbjct: 140 GYPFEAIKVVTSDGYVLLLERIP 162
>01_01_0505 -
3695937-3695972,3696251-3696316,3696658-3696747,
3696934-3697143,3697371-3697404,3697566-3697912
Length = 260
Score = 32.3 bits (70), Expect = 0.22
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 272 YILSEAGYDVWFANARGNTYSKAHISKNIDTFAFWNFTFHDISQNDLPAVIDYIMEIKGW 451
YI++ AG V+ + + YSK H K I FW + F + Q + AV+ I ++ W
Sbjct: 156 YIIAPAGESVYDQSIKNPCYSKMHGGKEI--AGFWGYLFQIMFQTNAGAVM--ITDLVFW 211
Query: 452 DVKINYIGH 478
+ ++ +
Sbjct: 212 FILYPFLAY 220
>06_03_1330 - 29375494-29376912
Length = 472
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 95 PAEAHTVLTKDGYILTIHRIPYAKNAKSKTPPRKTVLLHHGLLGSSADWILAG 253
P + V G++L +HR+ +A+SK PR+ + + + +W AG
Sbjct: 319 PCSKYLVELSPGHLLQVHRLRDKAHARSKWEPRQERVEYTTVKAELFEWNAAG 371
>03_01_0113 +
905535-905840,906601-906812,906929-907196,907314-907595
Length = 355
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +2
Query: 89 GYPAEAHTVLTKDGYILTIHRIPYAKNAKSKTPPRKTVLLHHGLLGSSADWILAGPKKAL 268
G P A V +DG + YA++ K R V+ HG GS D + P+ A
Sbjct: 52 GPPVAAPRVRLRDG-----RHLAYAESGVRKEDARYKVVFSHGFTGSRLDSVRPSPEVAE 106
Query: 269 AYILSEAGYD 298
+ G+D
Sbjct: 107 ELGVYMVGFD 116
>12_01_0015 -
111666-111747,112043-112368,112500-112635,112772-112955,
113067-113135,113703-113829,115810-116051,116125-116279,
116751-116822,116908-116976,117058-117129,117217-117349,
117439-117944,118033-118567,118753-118819
Length = 924
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 120 LKMATSSQSTGYPMRRTLNLKHHLGRLYYS 209
L + S+ STG P TL L+ G LYY+
Sbjct: 147 LSVCLSNASTGQPFISTLELRQFNGSLYYT 176
>11_01_0015 -
115965-116076,116432-116757,116889-117024,117161-117344,
117455-117523,118091-118217,120028-120269,120343-120497,
120969-121040,121126-121194,121276-121347,121435-121567,
121661-122166,122255-122789,122943-123018
Length = 937
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 120 LKMATSSQSTGYPMRRTLNLKHHLGRLYYS 209
L + S+ STG P TL L+ G LYY+
Sbjct: 150 LSVCLSNASTGQPFISTLELRQFNGSLYYT 179
>08_01_0298 -
2406254-2406322,2406444-2406541,2408652-2408769,
2408890-2408980,2409243-2409406,2410027-2410242,
2410405-2410475,2410552-2410619,2412027-2412166
Length = 344
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 167 NAKSKTPPRKTVLLHHGLLGSSADW 241
+A S P +++ HG+LGS+ADW
Sbjct: 27 DAVSSHDPDHLLVMVHGILGSNADW 51
>06_02_0065 - 11073816-11074384,11074605-11075160
Length = 374
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 237 IGS*LDLKKPWPTSYPKLVTMSGLQTPEA--ILILKLTYQRI*IRSPFGISH 386
+ S +D ++PWPT++ ++T Q E +++ T RS +G+SH
Sbjct: 112 LDSMIDDEEPWPTTFSNIITFYRWQETEQDDAHLVRATNLHGEFRSVYGMSH 163
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3
Query: 371 RRTYLYSLICEL*NKY 324
RRTYLYSLI + NKY
Sbjct: 159 RRTYLYSLIMPIMNKY 174
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 194 KTVLLHHGLLGSSADWI 244
K +L HG LG+S DW+
Sbjct: 1481 KVILFLHGFLGTSEDWV 1497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,559,368
Number of Sequences: 37544
Number of extensions: 306302
Number of successful extensions: 644
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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