Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F03
         (475 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   0.36 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.4  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.7  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   7.7  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 260 PMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSST 117
           P  VI + T  PS   +NR   +G    A A S V   +P+  T+S+T
Sbjct: 124 PSGVISTNTSPPSPILSNR---FGENEEADAASNVISSTPLPPTTSTT 168


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +1

Query: 79  KAELACVYSALILVDD--------DVAVTGEKISTILKAAAVDVEPYWPGLFAKAL 222
           K EL C+ + ++   D        +V +  EKI  +L+       P  PG FAK L
Sbjct: 310 KTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLL 365


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 194 YGSTSTAAAFSMVEIFSPVTATSSSTRIRAE 102
           YG T T ++ S  ++ +PV    +S +   E
Sbjct: 263 YGKTFTLSSASNAKLGAPVKGAGNSGKYTGE 293


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 121 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 252
           + D+A+TG+   +I +   +    Y+  L    L  I    L T
Sbjct: 373 NSDIAITGKNFFSITRGLILSFVDYFVFLLCSILVNIAFIKLAT 416


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,565
Number of Sequences: 336
Number of extensions: 1397
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)