Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F03
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   121   3e-28
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   117   4e-27
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    30   0.74 
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  121 bits (291), Expect = 3e-28
 Identities = 58/111 (52%), Positives = 70/111 (63%)
 Frame = +1

Query: 70  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 249
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 250 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 402
           T++ SG                                   DDDMGFGLFD
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  117 bits (282), Expect = 4e-27
 Identities = 57/111 (51%), Positives = 69/111 (62%)
 Frame = +1

Query: 70  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 249
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 250 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 402
           T++ SG                                   DDDMGFGLFD
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
 Frame = +1

Query: 145 EKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXX 324
           + +  IL A  VD +     L    L G  V +LI    +G+                  
Sbjct: 21  DDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVSGGAAPAAAAAPAAG 80

Query: 325 XXXXXXXXXXXXXXX----XDDDMGFGLFD 402
                               DDDMGFGLFD
Sbjct: 81  GAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 94  CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 264
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV +    IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 194 YGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQANSAF 78
           +GST+T  AFS   +F   T+T++S+      T   S F
Sbjct: 471 FGSTATKPAFSGGSLFGATTSTATSSAAATTTTPTTSLF 509


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 67  KMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 195
           KM  K  +    S ++ ++D VA+T +  + +  AAA+D  PY
Sbjct: 37  KMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 373 DDDMGFGLFD 402
           DDDMGFGLFD
Sbjct: 303 DDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 373 DDDMGFGLFD 402
           DDDMGFGLFD
Sbjct: 98  DDDMGFGLFD 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,255,986
Number of Sequences: 27780
Number of extensions: 126638
Number of successful extensions: 292
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)