Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F02
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   2e-21
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   27   7.7  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 42/62 (67%), Positives = 53/62 (85%)
 Frame = +1

Query: 178 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 357
           L EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ 
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQ 90

Query: 358 TS 363
           ++
Sbjct: 91  ST 92


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 114 EKSSGRSTCGEES*AQEDCKPSIREENKELCY 209
           EK  G  TCG+ES    DC P  +E   E CY
Sbjct: 94  EKKEGCYTCGDESHIARDC-PEKKESPGESCY 124


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +3

Query: 108  DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 287
            DR+KS+GR++      A +  K S R E++ +   P      R     A  E  SH  S 
Sbjct: 978  DRQKSNGRNSRSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRD---SAKKERQSHSESP 1034

Query: 288  GCVTASSQSAAANQPVH 338
              VT SS+     +P H
Sbjct: 1035 QRVTKSSKERPRKRPRH 1051


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 241 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDK 354
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKK 545


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 295  LQRRLKVPPPINQFTQTLDKTTSQRSVQDLGEIQARN*GSQERASKESRRSQ 450
            L+   K PP ++ F+Q LD     R      + Q  +   + R+ K  RR +
Sbjct: 1881 LEHAGKTPPALSSFSQQLDTRREIRENSGTNQPQTTDKPKETRSQKRRRRRE 1932


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,101
Number of Sequences: 59808
Number of extensions: 218422
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)