Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F02
         (469 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...   116   5e-28
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         26   0.75 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   4.0  
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    22   9.3  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score =  116 bits (278), Expect = 5e-28
 Identities = 49/64 (76%), Positives = 59/64 (92%)
 Frame = +1

Query: 178 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 357
           LFEKR KN+ IGQ++QP RDLSRFV+WPKYIRIQR +A+LQ+RLK+PPPINQFTQTLDK 
Sbjct: 37  LFEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQKRLKIPPPINQFTQTLDKP 96

Query: 358 TSQR 369
           T+Q+
Sbjct: 97  TAQQ 100



 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 353 KPQAKGLFKILEKYRPE 403
           KP A+ + K  +KYRPE
Sbjct: 95  KPTAQQVMKCWKKYRPE 111


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 267 YSHPASKGCVTASSQSAAANQPVHP 341
           + HP   G + A SQ     QPVHP
Sbjct: 165 HHHPGLTGLMQAPSQQQQHLQPVHP 189


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 108 DREKSSGRSTCGEES*AQEDCKPS 179
           DR ++ GRS C   S +  D +PS
Sbjct: 884 DRSEAGGRSLCTNGSSSGRDSQPS 907


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 235 DLSRFVRWPKYIRIQRQKAVLQRRLKVPPP 324
           D++R++ W K I+  R  A+  ++L+ P P
Sbjct: 343 DVARWLEWRKKIKEYRMTAM--KKLQPPKP 370


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 405,844
Number of Sequences: 2352
Number of extensions: 6941
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40820256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)