Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F02
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    99   8e-22
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    99   8e-22
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   100   1e-21
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    98   2e-21
Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical pr...    27   5.1  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =   99 bits (238), Expect = 8e-22
 Identities = 42/65 (64%), Positives = 55/65 (84%)
 Frame = +1

Query: 178 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 357
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 358 TSQRS 372
           +++++
Sbjct: 92  SARQA 96


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =   99 bits (238), Expect = 8e-22
 Identities = 42/65 (64%), Positives = 55/65 (84%)
 Frame = +1

Query: 178 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 357
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 358 TSQRS 372
           +++++
Sbjct: 92  SARQA 96


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 42/65 (64%), Positives = 55/65 (84%)
 Frame = +1

Query: 178 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 357
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194

Query: 358 TSQRS 372
           +++++
Sbjct: 195 SARQA 199


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = +1

Query: 178 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 351
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical
           protein W05B10.5 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 233 LVGWMSWPIAKF--FVLFSNRGFTIF 162
           LVGW +W I  F   +L SNR F +F
Sbjct: 97  LVGWFAWCIGPFSQVLLTSNRIFAVF 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,959,789
Number of Sequences: 27780
Number of extensions: 159228
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)