Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F01
         (369 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2E2P7 Cluster: Polymorphic outer membrane protein, put...    37   0.13 
UniRef50_Q9H329 Cluster: Band 4.1-like protein 4B; n=24; Amniota...    35   0.54 
UniRef50_Q9F2Z9 Cluster: Putative uncharacterized protein SCO434...    33   1.7  
UniRef50_Q4N452 Cluster: Putative uncharacterized protein; n=1; ...    32   3.8  
UniRef50_A3Y680 Cluster: Sensory box protein; n=1; Marinomonas s...    31   5.1  
UniRef50_UPI00015B60B9 Cluster: PREDICTED: similar to ENSANGP000...    31   6.7  

>UniRef50_A2E2P7 Cluster: Polymorphic outer membrane protein,
           putative; n=2; Trichomonas vaginalis G3|Rep: Polymorphic
           outer membrane protein, putative - Trichomonas vaginalis
           G3
          Length = 624

 Score = 36.7 bits (81), Expect = 0.13
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -3

Query: 157 TRMAPNVLLTPDVTYFKVCFHFYLNNIWRNVRILGLYFNHSLSN*SYDGC 8
           T    NVLL  DVTYF       ++ I R+ R L +++N+ L N    GC
Sbjct: 305 TNSGDNVLLDGDVTYFSNKDGMDVHKIARSARKLSIFYNYELLNGDLSGC 354


>UniRef50_Q9H329 Cluster: Band 4.1-like protein 4B; n=24;
           Amniota|Rep: Band 4.1-like protein 4B - Homo sapiens
           (Human)
          Length = 913

 Score = 34.7 bits (76), Expect = 0.54
 Identities = 23/81 (28%), Positives = 34/81 (41%)
 Frame = -2

Query: 338 NCSYFLLLPIQSRSERAVTAQNEETLTSLVVSQALRNYHSDPRPQCHQK*VNKSLLVLT* 159
           N SY L  P+ S S+R      E   T  + + + R++H       HQ   N SL +   
Sbjct: 454 NVSYPLPSPVLSSSDRLPFGIEENGGTPFLTAASGRHHHQHQHQHQHQHHSNYSLSLTLE 513

Query: 158 NSNGPKRTVNTRCDVFQSMFP 96
           N  GP R+ N+       + P
Sbjct: 514 NKEGPLRSPNSSSKSLTKLSP 534


>UniRef50_Q9F2Z9 Cluster: Putative uncharacterized protein SCO4348;
           n=1; Streptomyces coelicolor|Rep: Putative
           uncharacterized protein SCO4348 - Streptomyces
           coelicolor
          Length = 723

 Score = 33.1 bits (72), Expect = 1.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -3

Query: 187 LINPYW--FLRKTRMAPNVLLTPDVTYFKVCFHFYLN--NIWRNVRILGLYFNH 38
           +INP W    R+  MA    L PDV      F   LN  ++W  ++ L L+FNH
Sbjct: 68  IINPRWRQVAREYLMARLAPLHPDVAVLPQAFRTPLNPNSLWSELKHLALWFNH 121


>UniRef50_Q4N452 Cluster: Putative uncharacterized protein; n=1;
            Theileria parva|Rep: Putative uncharacterized protein -
            Theileria parva
          Length = 2089

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -3

Query: 136  LLTPDVTYFKVCFHFYLNNIWRNVRILGLYFNHSLS 29
            LL P++  F++     L+N+  NV + GLY+N+SLS
Sbjct: 1914 LLIPELVPFRLT-PIILHNLGTNVNVCGLYYNNSLS 1948


>UniRef50_A3Y680 Cluster: Sensory box protein; n=1; Marinomonas sp.
           MED121|Rep: Sensory box protein - Marinomonas sp. MED121
          Length = 809

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 27  LLRLWLKYKPNILTLRQILFK*KWKHTLKY 116
           L  L L Y P++L L ++  + KWKHT ++
Sbjct: 5   LASLSLIYAPSVLALEEVTLQLKWKHTFQF 34


>UniRef50_UPI00015B60B9 Cluster: PREDICTED: similar to
           ENSANGP00000022492; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to ENSANGP00000022492 - Nasonia
           vitripennis
          Length = 483

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 163 RKTRMAPNVLLTPDVTYFKVCFHFYLNNIWRNVRILGLYFNHS 35
           R +R   N LL+P   YFK+  H  + NIW       +  +HS
Sbjct: 206 RHSRQGVNQLLSPGQVYFKLGKHVEVENIWAGTYATFVKASHS 248


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,536,478
Number of Sequences: 1657284
Number of extensions: 5547161
Number of successful extensions: 11281
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11280
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)