Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F01
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    27   1.2  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   3.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   4.9  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   4.9  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    24   8.6  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   8.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   8.6  

>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +1

Query: 13  HHMINY*GYG*NISPIF*HCARYYLNKSGNIL*NTSHLVLTVRLGPFEFYVRTNRDL 183
           HH++ Y  Y  ++         +Y+N SG        L +  ++G    Y+   RD+
Sbjct: 175 HHVMLYQYYPKSLQEALWAAVEHYVNNSGEAYSTVQKLAVQKKIGNIRMYLVNPRDI 231


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 344 KQNCSYFLLLPIQSRSERA 288
           K+NC+YFL L + S S  A
Sbjct: 428 KRNCTYFLTLDLSSESLHA 446


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 118 TYFKVCFHFYLNNIWRNVRILGLYF 44
           TY  + F++    +WRN+ I+  Y+
Sbjct: 774 TYLYISFNYKTRQLWRNLAIIIGYY 798


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -3

Query: 214 PVPNVIKNKLINPYWFLRKTRMAPNVLLTPDVTYFKVCFHFYLNNIWRNVRILG-LYFNH 38
           P  + +++ L N +W     R+  N+  +  +TY K       ++ W  V     LY  H
Sbjct: 192 PELDKLRHSLYN-WWVSILRRLQSNISTSERITYTKAILAIAKHHCWNKVEHSALLYLEH 250

Query: 37  SL 32
            L
Sbjct: 251 QL 252


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 39  WLKYKPNILTLRQILF 86
           WLKYK N  T  ++LF
Sbjct: 889 WLKYKKNRSTFAKLLF 904


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 269 ETLTSLVVSQALRNYHSDPRPQCHQK*VNKSLLVL 165
           +T+ +  V +AL++Y  DP      K   +SLLVL
Sbjct: 454 QTIIASPVYEALKSYRDDPNLAYQLKQNVRSLLVL 488


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 323 LLLPIQSRSERAVTAQNEETLTSLVVSQALRN 228
           +L+P+ S+S+   + +N+  +T +   Q LRN
Sbjct: 37  ILIPLISKSKDYESIKNDRIVTEVNYEQQLRN 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,405
Number of Sequences: 5004
Number of extensions: 24623
Number of successful extensions: 57
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)