Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F01
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442...    27   4.6  
03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196     27   6.1  
05_04_0295 + 19940822-19940906,19940976-19941902,19941956-19942866     26   8.1  

>12_01_1111 +
           11842837-11843094,11843142-11843255,11843267-11844247,
           11861747-11862025,11862998-11863098,11863723-11863792,
           11863947-11863974,11864057-11864114,11864440-11864536
          Length = 661

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 300 VREGRYRPKRRNSYFPRGIAS 238
           VR GR  P+RR S  P+GIAS
Sbjct: 120 VRYGRAAPRRRASPEPKGIAS 140


>03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196
          Length = 240

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 253 SWYRKHYVITIQIPVPNVIKNKLINPYWF 167
           SW     VI + IP P+ +  + I  YWF
Sbjct: 110 SWCEDRCVIAVVIPQPSEVVVREIATYWF 138


>05_04_0295 + 19940822-19940906,19940976-19941902,19941956-19942866
          Length = 640

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 205 NVIKNKLINPYWFLRKTRMAPNVLLTPDVTYFKVCFHFY 89
           N+ + +L   YW +         LL  ++ Y+ VCFHFY
Sbjct: 567 NINRGRLDYYYWLV-------TFLLVLNLAYYFVCFHFY 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,374,924
Number of Sequences: 37544
Number of extensions: 138363
Number of successful extensions: 258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)