Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F01
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43319| Best HMM Match : Laminin_A (HMM E-Value=0.0086)              28   2.7  
SB_40390| Best HMM Match : BON (HMM E-Value=0.68)                      26   8.3  

>SB_43319| Best HMM Match : Laminin_A (HMM E-Value=0.0086)
          Length = 375

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 94  FYLNNIWRNVRILGL---YFNHSLSN*SYDGCL 5
           F +N I+RNV +LG+   + +  +S  SY GCL
Sbjct: 8   FQMNLIFRNVAVLGIQGTFASRKMSFSSYPGCL 40


>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
          Length = 561

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 235 YVITIQIPVPNVIKNKLINPYWFLRKTRMAPNVLLTP 125
           Y  + Q P   ++ N L+ PY     T + PN LL P
Sbjct: 134 YGPSAQPPATGLVPNPLLRPYAPPLATALVPNPLLQP 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,980,706
Number of Sequences: 59808
Number of extensions: 169898
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)