Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E24
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    28   0.81 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   3.3  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    26   3.3  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    25   5.7  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    25   7.5  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    25   7.5  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    25   7.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   10.0 

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 174 RKMMEHIRQFDWCSSQLDTEFVMEEDLDNCVTEKILRNKFHDPLVSSDSENETNNKIN 347
           + ++E ++ F+ CS    T  +   D D   + K    KF+  LV  D EN    KIN
Sbjct: 130 QNVLERVKVFNSCSPPKPTNPITIIDNDKTHSFK----KFYKSLVKEDEENGIEKKIN 183


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 201 FDWCSSQLDTEFVMEEDLDNC 263
           F+  SSQL +EF   ED++NC
Sbjct: 93  FNERSSQLVSEFTTTEDIENC 113


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 486 CNQNPNILRGYKCRDLLRVIIR 551
           C+ NPNI++   C++L R++++
Sbjct: 42  CSLNPNIIKCGNCKNLCRLLLQ 63


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +3

Query: 243 EEDLDNCV-TEKILRNKFHDPLVSSDSENETNNKINWDEVFTKKKDADRFCNVFVPALRP 419
           E+ LD     EK     F+  L  +D +N        DE       A   C +++P  + 
Sbjct: 30  EQSLDEATFIEKGSAQAFYHSLFENDRDNSHTMNSKRDEAGF----ACEVCQIYIPNSKK 85

Query: 420 LPQYPKLSALNSQQH 464
           +  +  ++ L S QH
Sbjct: 86  INHFKSMTHLLSSQH 100


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 442 DNFGYCGRGRSAGTNTLQNRSASFFLVKTSSQLILL--LVSFSESLD 308
           D+ GY       G   L+NR A   ++++S++++L   LV+  +SLD
Sbjct: 144 DSLGYIFESNVFGHFYLKNRLAELKVLRSSTKVVLTSSLVAEKKSLD 190


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 54  HLSNINGVSVNNIEAINKI 110
           ++ N +  SVNN++ INKI
Sbjct: 242 YIKNFHNESVNNVDLINKI 260


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 130 RCDYLKTILFIASILFTDTPLIFDKCYMTHHVLHII 23
           RC  LKT   +A  +  + P  +++C M   +L ++
Sbjct: 146 RCQDLKTQQIVAIKVIKNKPAFYNQCVMEVSILELL 181


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 200 LSDMFHHFSRIKIVLPQFH 144
           ++D   HF  +K+ LP FH
Sbjct: 73  MADCMGHFGYVKLALPVFH 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,587
Number of Sequences: 5004
Number of extensions: 45064
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)