Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E24
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0975 + 9819387-9821512,9821768-9821910,9822185-9822349,982...    31   0.82 
01_05_0648 + 23915469-23915898,23916551-23916619,23916956-239173...    31   0.82 
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908...    28   5.8  
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822...    27   7.7  

>08_01_0975 +
           9819387-9821512,9821768-9821910,9822185-9822349,
           9822382-9822419
          Length = 823

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 465 NAAENSKLIILDTVGEGGALGQTHCKIDLHPFS 367
           N+ + S+LII   + E  A+ +  CKI+L P S
Sbjct: 309 NSGKGSRLIITTRIDEVAAIAEDACKINLEPLS 341


>01_05_0648 +
           23915469-23915898,23916551-23916619,23916956-23917315,
           23918435-23918973
          Length = 465

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 404 PSAPPSPTVSKIISFEFSAALPMFESAMQS 493
           P  PP+PT+S +++  FS+ + M  S++ S
Sbjct: 156 PDPPPTPTISPVVTVLFSSCMTMIISSISS 185


>01_07_0008 +
           40389744-40389896,40389967-40390048,40390693-40390808,
           40391107-40391195,40391859-40391904,40392248-40392716,
           40392825-40392952,40393182-40393253,40393512-40393885,
           40394005-40394545,40394653-40394952,40395167-40395268
          Length = 823

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 258 NCVTEKILRNKFHDPLVSSDSENETNN 338
           NCV E +L NKF + L S   +N   N
Sbjct: 432 NCVMEVLLNNKFEEWLFSKYEQNSEGN 458


>08_01_0841 +
           8223768-8223871,8227749-8228745,8228779-8228828,
           8228896-8230396
          Length = 883

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +3

Query: 237 VMEEDLDNCVTEKILRNKFHDPLVSSDSENETNNKINWDEVFTKKKDADRFCNVFVPAL 413
           + ++ +DN +   +  NK     V   ++N T N + W E   +    D+ C   V A+
Sbjct: 134 IADQVIDNHMNFMVALNKVLSRSVEGTTDNWTQNVVTWAEAPEESASNDKTCAPKVTAV 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,018
Number of Sequences: 37544
Number of extensions: 259529
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)