Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E24
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.52 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   3.7  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.4  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   6.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.4  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 398 VCPSAPPSPTVSKIISFEFSAALPMF 475
           V PSA  S  ++K++S  ++A +PMF
Sbjct: 138 VQPSATFSLDLNKVVSVFYTAVIPMF 163


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 371 KGCRSILQCVCPS 409
           +GC ++L+CV PS
Sbjct: 144 RGCTAVLRCVVPS 156


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 371 KGCRSILQCVCPS 409
           +GC ++L+CV PS
Sbjct: 144 RGCTAVLRCVVPS 156


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 398 VCPSAPPSPTVSKIISFEFSAALPM 472
           V PSA  S  ++K++S  ++A +PM
Sbjct: 139 VHPSATFSLDLNKVVSVFYTAVIPM 163


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 5  EAKSKHYNV*NMMCHITFIKYQW 73
          +AK+ HY++ +   +I  +KYQW
Sbjct: 17 QAKA-HYSLRDFKANIFQVKYQW 38


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 367 RKRMQIDFAMCLSQR 411
           R+R++I  A+CL++R
Sbjct: 36  RRRIEIAHALCLTER 50


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 367 RKRMQIDFAMCLSQR 411
           R+R++I  A+CL++R
Sbjct: 36  RRRIEIAHALCLTER 50


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 367 RKRMQIDFAMCLSQR 411
           R+R++I  A+CL++R
Sbjct: 36  RRRIEIAHALCLTER 50


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 367 RKRMQIDFAMCLSQR 411
           R+R++I  A+CL++R
Sbjct: 298 RRRIEIAHALCLTER 312


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 480 VLCNQNPNILRGYKCRDLLRVIIRYL 557
           V+ ++ PN+L G+K   +  + +  L
Sbjct: 483 VIFSERPNLLEGWKVEKIQEIYLEAL 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,111
Number of Sequences: 438
Number of extensions: 2913
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)