Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E23
         (566 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CBA9E Cluster: ATPase, histidine kinase-, DNA g...    34   2.7  
UniRef50_Q7QD01 Cluster: ENSANGP00000018576; n=4; Culicidae|Rep:...    34   2.7  
UniRef50_Q0LS81 Cluster: Helix-turn-helix type 3; n=1; Caulobact...    33   3.5  
UniRef50_Q23MF3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.7  
UniRef50_Q030N8 Cluster: Predicted transcriptional regulator con...    32   8.1  

>UniRef50_UPI00006CBA9E Cluster: ATPase, histidine kinase-, DNA
           gyrase B-, and HSP90-like domain containing protein;
           n=1; Tetrahymena thermophila SB210|Rep: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           containing protein - Tetrahymena thermophila SB210
          Length = 1585

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +3

Query: 234 NKEKLMCAI*IGRRETLKKRTVYETRGLVHRVNHALKNFMNKSDLHQKRTVAFSFHRLSN 413
           N+ +++CA    +R T ++  +     L + +NH  KN     D HQ+R V+F   +  N
Sbjct: 435 NQHEIICASEDTQRNTEREMLLPSQSNLKNLINHIQKN-KQSEDRHQQRQVSFQNSQTEN 493

Query: 414 HN 419
           +N
Sbjct: 494 NN 495


>UniRef50_Q7QD01 Cluster: ENSANGP00000018576; n=4; Culicidae|Rep:
           ENSANGP00000018576 - Anopheles gambiae str. PEST
          Length = 423

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 276 ETLKKRTVYETRGLVHRVNHALKNFMNKSDLHQKRTVAFSFHRL 407
           E  K  T+ E  GLVHR+ H   +  N+++L  +R   F   RL
Sbjct: 348 EKAKAATLSEASGLVHRIQHTYDDLQNQTNLALERLAVFLSGRL 391


>UniRef50_Q0LS81 Cluster: Helix-turn-helix type 3; n=1; Caulobacter
           sp. K31|Rep: Helix-turn-helix type 3 - Caulobacter sp.
           K31
          Length = 143

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 95  KTSTAGHRYPLKKGGFAINATLGRRVGDRSRRLWWAEDAA 214
           K    GH +P+ K    +   LGRR+G R + L W + AA
Sbjct: 35  KRLLVGHIWPMLKTSSELLQELGRRIGARRKALGWTQQAA 74


>UniRef50_Q23MF3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 209

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 19/67 (28%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
 Frame = +3

Query: 288 KRTVYETRGLVHRVNHALKNFMNKSDL-HQK-----RTVAFSFHRLSNHNDVKEVFTLKK 449
           ++ VY+TRG++ +V  A+   ++ S+L H +      TV FS  R +   D+ E+++L++
Sbjct: 86  QKIVYKTRGILTKVGRAIAVDLSDSNLPHDQGIKPHMTVVFSKERFT-QEDINELYSLEQ 144

Query: 450 KYILQEG 470
           ++ + +G
Sbjct: 145 QFRISQG 151


>UniRef50_Q030N8 Cluster: Predicted transcriptional regulator
           containing CBS domains; n=3; Lactococcus lactis|Rep:
           Predicted transcriptional regulator containing CBS
           domains - Lactococcus lactis subsp. cremoris (strain
           SK11)
          Length = 419

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 291 RTVYETRGLVHRVNHALKNFMNKSDLHQKRTVAFSFHR----LSNHNDVKEVFTLKKKYI 458
           RT Y+T  + +R++HAL N + K D+    TV   FH+    L   + VK+   L KK  
Sbjct: 162 RTSYDTFTVANRISHALANELIKKDV---ITVGDVFHQKRATLREEDTVKDFLDLVKKTN 218

Query: 459 LQEGQVYQPWN 491
                V  P+N
Sbjct: 219 DSRFAVVNPYN 229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,930,555
Number of Sequences: 1657284
Number of extensions: 12049749
Number of successful extensions: 30656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30572
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)