Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E23
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.48 
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   0.83 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   1.9  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   4.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   5.9  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -2

Query: 196 PQTPTAIANPPPKRG-VYGKPPFF*RIPMSSSGRLLVKWNIVNETKTLSVTFSLSH*TY 23
           P TP+     P     V    P    +PMSS G L   ++ +NE    S  FS+S   Y
Sbjct: 274 PSTPSPFGGSPVMHPPVSNLSPRTPAVPMSSDGHLAPAFDFLNENPIWSKRFSISSIKY 332


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 192 KRLLRSPTRLPSVAFMANPPFFRGYLCPAVDV 97
           K  L + T+LP + F  NP   R +L P + +
Sbjct: 36  KNSLENDTQLPQILFCINPKSIRNFLFPPIAI 67


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 386 DSTFLMEVGFVHEIFESVVNPVD*SACLIDGTFF 285
           D   L E GF+ +I++ + N V+  +   D TFF
Sbjct: 570 DPRSLYERGFIGDIYQFLYNAVNVGSVAFDATFF 603


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 GRRETLKKRTVYETRGLVHRVNHALK 344
           G+ ET +KR V+E + L+H+  H  K
Sbjct: 51  GKIETPRKRIVFEKKPLLHKPVHIQK 76


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 270 RRETLKKRTVYETRGLVHRVNHALKNFMN 356
           R E LKK    + RG+VH +  A+ N+ +
Sbjct: 544 RNEALKKLVAMDFRGIVHGLADAVLNWQS 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,376
Number of Sequences: 5004
Number of extensions: 51968
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)