Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E23
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232           29   3.4  
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413...    29   3.4  
03_02_0634 + 9986742-9987512                                           28   6.0  
02_02_0489 + 10869482-10871218                                         27   7.9  

>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
          Length = 1035

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 229 EQGMVSSIFCPPQTPTAIANPPPKRGVYGKPPFF*RIPMSSSGRL 95
           E G  SS++   ++P     PPP       PP +  +P + +G L
Sbjct: 233 EMGRTSSLYLDRRSPPLPPRPPPPPVRVASPPLYTLVPPAETGFL 277


>05_01_0495 -
           4136871-4136906,4137043-4137171,4137545-4137694,
           4137782-4137847,4138124-4138168,4139022-4139102,
           4139202-4139283,4139571-4139642,4140473-4140573,
           4140690-4140806,4140929-4141249
          Length = 399

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 212 QHLLPTTNAYCDRQPASQAWRLWQTPL 132
           + +LP    +C R+P  + WR W  P+
Sbjct: 247 EEVLPEFQKHCRRRPLPEFWRDWDRPI 273


>03_02_0634 + 9986742-9987512
          Length = 256

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 217 VSSIFCPPQTPTAIANPPPKRGVYGKPPFF*RIPMSSSG 101
           V  +   P TPT   +PPP  G    P F    P +SSG
Sbjct: 7   VPPVVFTPSTPTHRRHPPPGTGPSPPPAFAPPRPSTSSG 45


>02_02_0489 + 10869482-10871218
          Length = 578

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = -2

Query: 181 AIANPPPKRGVYGKPPFF*R-IPMSSSGRLLVKWNIVNETKTLSVTFS--LSH*TYFDVE 11
           A A P P  G   K        P S SG+ L +W   +E K L V  +   SH T   VE
Sbjct: 170 AAAEPAPSTGKVSKYNLAPEPSPSSKSGKALSRWTTDDEVKILEVLVAHFKSHGTQLKVE 229

Query: 10  ILV 2
            ++
Sbjct: 230 GII 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,231,838
Number of Sequences: 37544
Number of extensions: 347557
Number of successful extensions: 1065
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)